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Record W2791710619 · doi:10.1111/ecog.03424

<b>Macroecological and macroevolutionary patterns emerge in the universe of GNU/Linux operating systems</b>

2018· article· en· W2791710619 on OpenAlexaff
Petr Keil, A. Andrew M. MacDonald, Kelly S. Ramirez, Joanne M. Bennett, Gabriel E. García‐Peña, Benjamin Yguel, Bérenger Bourgeois, Carsten Meyer

Bibliographic record

VenueEcography · 2018
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicEvolution and Genetic Dynamics
Canadian institutionsUniversity of British Columbia
FundersDeutsches Zentrum für integrative Biodiversitätsforschung Halle-Jena-LeipzigAgence Nationale de la RechercheVolkswagen FoundationDeutsche Forschungsgemeinschaft
KeywordsBiologyMacroecologyBiodiversityPhylogenetic treeUniverseExtinction (optical mineralogy)Evolutionary biologyEcologyAstrophysicsPhysicsPaleontology

Abstract

fetched live from OpenAlex

What leads to classically recognized patterns of biodiversity remains an open and contested question. It remains unknown if observed patterns are generated by biological or non‐biological mechanisms, or if we should expect the patterns to emerge in non‐biological systems. Here, we employ analogies between GNU/Linux operating systems (distros), a non‐biological system, and biodiversity, and we look for a number of well‐established ecological and evolutionary patterns in the Linux universe. We demonstrate that patterns of the Linux universe generally match macroecological patterns. Particularly, Linux distro commonness and rarity follow a skewed distribution with a clear excess of rare distros, we observed a power law mean‐variance scaling of temporal fluctuation, but there is only a weak relationship between niche breadth (number of software packages) and commonness. The diversity in the Linux universe also follows general macroevolutionary patterns: the number of phylogenetic lineages increases linearly through time, with clear per‐species diversification and extinction slowdowns, something that has been indirectly estimated, but not directly observed in biology. Moreover, the composition of functional traits (software packages) exhibits significant phylogenetic signal. The emergence of macroecological patterns across Linux suggests that the patterns are produced independently of system identity, which points to the possibility of non‐biological drivers of fundamental biodiversity patterns. At the same time, our study provides a step towards using Linux as a model system for exploring macroecological and macroevolutionary patterns.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: Observational
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.051
Threshold uncertainty score0.244

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.006
GPT teacher head0.235
Teacher spread0.229 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations8
Published2018
Admission routes1
Has abstractyes

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