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Record W2796053515 · doi:10.1002/cam4.1445

Genetic overlap between endometriosis and endometrial cancer: evidence from cross‐disease genetic correlation and GWAS meta‐analyses

2018· review· en· W2796053515 on OpenAlex

Why this work is in the frame

A frame that forgets how it found something cannot be audited. These are the routes that admitted this work.

fundA Canadian funder is recorded on the work.
no affNo Canadian affiliation: this work is invisible to an affiliation-only frame.
No Canadian affiliation. An affiliation-only frame, the usual design, would never have seen this work. It is one of the works that make the case for inverting the frame.

Bibliographic record

VenueCancer Medicine · 2018
Typereview
Languageen
FieldMedicine
TopicEndometriosis Research and Treatment
Canadian institutionsnot available
FundersMedical Research and Materiel CommandNational Cancer InstituteCancer Council TasmaniaCancer Council QueenslandCancer Council VictoriaNational Health and Medical Research CouncilAustralian Research CouncilMedical Research CouncilNational Institutes of HealthPeter MacCallum FoundationVincent Fairfax Family FoundationHaukeland UniversitetssjukehusNorges ForskningsrådUniversitetet i BergenQIMR Berghofer Medical Research InstituteStockholms Läns LandstingKarolinska InstitutetAgency for Science, Technology and ResearchCanadian Institutes of Health ResearchCancerfondenOvarian Cancer Research FundCancer AustraliaCancer Council South AustraliaHunter Medical Research InstituteNational Institute for Health and Care ResearchFred C. and Katherine B. Andersen FoundationHelse VestCancer Council NSWSusan G. Komen for the CureOvarian Cancer AustraliaCancer Research UKWellcome TrustBreast Cancer Research FoundationUniversity of CambridgeKreftforeningenMayo Foundation for Medical Education and ResearchWellcomeRoswell Park Cancer InstituteEuropean CommissionU.S. Department of Defense
KeywordsGenome-wide association studyEndometriosisConcordanceEndometrial cancerBiologySNPGenetic associationOncologyMeta-analysisDiseaseEpidemiologyGeneticsSingle-nucleotide polymorphismCancerMedicineInternal medicineGenotypeGene

Abstract

fetched live from OpenAlex

Abstract Epidemiological, biological, and molecular data suggest links between endometriosis and endometrial cancer, with recent epidemiological studies providing evidence for an association between a previous diagnosis of endometriosis and risk of endometrial cancer. We used genetic data as an alternative approach to investigate shared biological etiology of these two diseases. Genetic correlation analysis of summary level statistics from genomewide association studies (GWAS) using LD Score regression revealed moderate but significant genetic correlation ( r g = 0.23, P = 9.3 × 10 −3 ), and SNP effect concordance analysis provided evidence for significant SNP pleiotropy ( P = 6.0 × 10 −3 ) and concordance in effect direction ( P = 2.0 × 10 −3 ) between the two diseases. Cross‐disease GWAS meta‐analysis highlighted 13 distinct loci associated at P ≤ 10 −5 with both endometriosis and endometrial cancer, with one locus (SNP rs2475335) located within PTPRD associated at a genomewide significant level ( P = 4.9 × 10 −8 , OR = 1.11, 95% CI = 1.07–1.15). PTPRD acts in the STAT3 pathway, which has been implicated in both endometriosis and endometrial cancer. This study demonstrates the value of cross‐disease genetic analysis to support epidemiological observations and to identify biological pathways of relevance to multiple diseases.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.001
metaresearch head score (Gemma)0.019
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesMetaresearch, Meta-epidemiology (narrow), Insufficient payload (model declined to judge)
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Other design · Consensus signal: none
GenreCandidate signal: Review · Consensus signal: Review
Teacher disagreement score0.901
Threshold uncertainty score1.000

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0010.019
Meta-epidemiology (narrow)0.0010.001
Meta-epidemiology (broad)0.0060.001
Bibliometrics0.0020.003
Science and technology studies0.0000.001
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.001
Insufficient payload (model declined to judge)0.0020.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.334
GPT teacher head0.512
Teacher spread0.177 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it