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Record W2799512068 · doi:10.1126/science.aar1965

Recent Asian origin of chytrid fungi causing global amphibian declines

2018· article· en· W2799512068 on OpenAlexafffund
Simon J. O’Hanlon, Adrien Rieux, Rhys A. Farrer, Gonçalo M. Rosa, Bruce Waldman, Arnaud Bataille, Tiffany A. Kosch, Kris A. Murray, Balázs Brankovics, Matteo Fumagalli, Michael D. Martin, Nathan Wales, Mario Alvarado‐Rybak, Kieran A. Bates, Lee Berger, Susanne Böll, Lola Brookes, Frances C. Clare, Élodie A. Courtois, Andrew A. Cunningham, Thomas M. Doherty‐Bone, Pria N. Ghosh, David J. Gower, William E. Hintz, ‎Jacob Höglund, Thomas S. Jenkinson, Chun-Fu Lin, Anssi Laurila, Adeline Loyau, An Martel, Sara Meurling, Claude Miaud, Pete Minting, Frank Pasmans, Dirk S. Schmeller, Benedikt R. Schmidt, Jennifer Shelton, Lee F. Skerratt, Freya Smith, Claudio Azat, Matteo Spagnoletti, Giulia Tessa, Luı́s Felipe Toledo, Andrés Valenzuela‐Sánchez, Ruhan Verster, Judit Vörös, Rebecca J. Webb, Claudia Wierzbicki, Emma Wombwell, Kelly R. Zamudio, David M. Aanensen, Timothy Y. James, M. Thomas P. Gilbert, Ché Weldon, Jaime Bosch, François Balloux, Trenton W. J. Garner, Matthew C. Fisher

Bibliographic record

VenueScience · 2018
Typearticle
Languageen
FieldEnvironmental Science
TopicAmphibian and Reptile Biology
Canadian institutionsUniversity of Victoria
FundersEuropean Research CouncilWellcome TrustBiotechnology and Biological Sciences Research CouncilNational Research Foundation of KoreaMedical Research CouncilNatural Sciences and Engineering Research Council of CanadaVetenskapsrådetNatural Environment Research CouncilNERC Biomolecular Analysis FacilityConselho Nacional de Desenvolvimento Científico e TecnológicoAustralian Research CouncilMagyar Tudományos AkadémiaFundação de Amparo à Pesquisa do Estado de São PauloRoyal Geographical SocietyMorris Animal FoundationHungarian Scientific Research FundLeverhulme TrustBiodiversa+Svenska Forskningsrådet FormasNational Research FoundationRoyal Zoological Society of ScotlandSight Research UKAgence Nationale de la RechercheOxford Nanopore TechnologiesConservation Leadership ProgrammeNational Science Foundation
KeywordsAmphibianBiologyFungusChytridiomycotaChytridiomycosisPeninsulaZoologyEcologyBotanyAscomycotaGeneGenetics

Abstract

fetched live from OpenAlex

Panzootic chytrid fungus out of Asia Species in the fungal genus Batrachochytrium are responsible for severe declines in the populations of amphibians globally. The sources of these pathogens have been uncertain. O'Hanlon et al. used genomics on a panel of more than 200 isolates to trace the source of the frog pathogen B. dendrobatidis to a hyperdiverse hotspot in the Korean peninsula (see the Perspective by Lips). Over the past century, the trade in amphibian species has accelerated, and now all lineages of B. dendrobatidis occur in traded amphibians; the fungus has become ubiquitous and is diversifying rapidly. Science , this issue p. 621 ; see also p. 604

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: Observational
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.003
Threshold uncertainty score0.010

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.001
Science and technology studies0.0000.000
Scholarly communication0.0010.001
Open science0.0000.000
Research integrity0.0000.001
Insufficient payload (model declined to judge)0.0030.001

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.022
GPT teacher head0.291
Teacher spread0.269 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations595
Published2018
Admission routes2
Has abstractyes

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