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Record W2809215572 · doi:10.1093/neuonc/noy059.469

MBRS-24. INVESTIGATING THE ROLE OF THE RNA BINDING PROTEIN, MUSASHI 1 IN PEDIATRIC GROUP 3 MEDULLOBLASTOMA

2018· article· en· W2809215572 on OpenAlexaff
Michelle Kameda-Smith, Chitra Venugopal, David Bakhshinyan, Branavan Manoranjan, Ashley Adile, Minomi Subapanditha, Adam Fleming, Kristen Hope, Sheila K. Singh

Bibliographic record

VenueNeuro-Oncology · 2018
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicRNA modifications and cancer
Canadian institutionsMcMaster UniversityPopulation Health Research Institute
Fundersnot available
KeywordsMedulloblastomaGene knockdownBiologyRNA-binding proteinNeural stem cellCancer researchStem cellProgenitor cellTranslation (biology)microRNAMessenger RNAGeneCell biologyGenetics

Abstract

fetched live from OpenAlex

Pediatric brain tumours are the leading cause of solid cancer mortality with medulloblastoma (MB) representing the most frequent malignant solid central nervous system (CNS) tumour. To date, most experimental efforts to understand the biological mechanism of solid cancers have been directed towards transcriptional regulatory mechanisms that modulate fate determination in stem and progenitor cells. However, little is known regarding post-transcriptional pathways that contribute to mRNA stability, translation into protein, and functional effects on cell fate. The mRNA binding protein, Musashi (Msi) has been observed to play a crucial role in promoting stem cell self–renewal and is implicated in CNS tumours including glioma and MB with associated poor clinical prognosis. METHODS AND Since increasing brain tumour stem cell or brain tumour-initiating cell (BTIC) frequency is associated with tumor aggressiveness and poor patient outcome, we probed for Msi1 within 251 primary human MBs from four transcriptional databases and 74 NanoString-subgrouped MBs, and found it was enriched in aggressive MB subgroups. Applying gene knockdown and overexpression of Msi1 in Group 3 MB, we have performed in vitro and in vivo assays elucidating how these RNA-binding proteins help to maintain the BTIC state promote an aggressive tumour phenotype. Though transcriptional manipulation has uncovered novel druggable targets to treat MB, bench-to-bedside clinical translation of these targets has yet to yield significant patient benefit. For the first time, Msi analysis in MB provides a novel paradigm for treatment of MB through targeting post-transcriptional pathways and regulators.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.004
Threshold uncertainty score0.007

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0010.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.013
GPT teacher head0.256
Teacher spread0.243 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2018
Admission routes1
Has abstractyes

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