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Record W2810067915 · doi:10.1089/fpd.2017.2415

Outbreak of <i>Vibrio parahaemolyticus</i> Associated with Consumption of Raw Oysters in Canada, 2015

2018· article· en· W2810067915 on OpenAlexaffabout
Marsha Taylor, Joyce Cheng, Davendra Sharma, Olga Bitzikos, Réka Gustafson, Murray Fyfe, Richard Greve, Michelle Murti, Jason Stone, Lance Honish, Victor Mah, Nisha Punja, April Hexemer, Lorraine McIntyre, Bonnie Henry, Perry Kendall, Robin Atkinson, Enrico Buenaventura, Amalia Martinez-Perez, Eleni Galanis, the Outbreak Invesitigation Team

Bibliographic record

VenueFoodborne Pathogens and Disease · 2018
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicVibrio bacteria research studies
Canadian institutionsHealth CanadaMinistry of HealthAlberta HealthAlberta Health ServicesFraser HealthUniversity of British ColumbiaBC Centre for Disease ControlIsland HealthPublic Health Agency of CanadaVancouver Coastal HealthCanadian Food Inspection Agency
FundersNational Oceanic and Atmospheric AdministrationWashington State University
KeywordsVibrio parahaemolyticusOutbreakOysterVibrio InfectionsOstreidaeEnvironmental healthConsumption (sociology)Incidence (geometry)VibrioVeterinary medicineFisheryShellfishBiologyMedicineVirologyAquatic animalFish <Actinopterygii>Bacteria

Abstract

fetched live from OpenAlex

There has been a steady increase in illness incidence of Vibrio parahaemolyticus (Vp). The majority of illnesses are associated with consumption of raw oysters. In the summer of 2015, Canada experienced the largest outbreak associated with the consumption of raw oysters harvested from British Columbia (BC) coastal waters. Case investigation of laboratory-confirmed cases was conducted to collect information on exposures and to assist traceback. Investigations at processors and oyster sampling were conducted. Eighty-two laboratory-confirmed cases of Vp infection were reported between January 1 and October 26, 2015. The majority of the cases were reported in BC, associated with consumption of raw BC oysters in restaurants. Sea surface temperatures were above the historical levels in 2015. This outbreak identified the need to improve surveillance and response to increases in human cases of Vp. This is of particular importance due to the potential for increasing water temperatures and the likelihood of additional outbreaks of Vibrio.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.001
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: Observational
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.024
Threshold uncertainty score0.158

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.001
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0010.001
Science and technology studies0.0040.001
Scholarly communication0.0010.000
Open science0.0010.001
Research integrity0.0010.001
Insufficient payload (model declined to judge)0.0010.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.011
GPT teacher head0.237
Teacher spread0.226 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations53
Published2018
Admission routes2
Has abstractyes

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