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Record W2823074881 · doi:10.1071/an17551

Contemporary group alternatives for genetic evaluation of milk yield in small populations of dairy cattle

2018· article· en· W2823074881 on OpenAlexaff
Rodrigo Junqueira Pereira, Flávio S. Schenkel, Ricardo Vieira Ventura, Denise Rocha Ayres, Lenira El Faro, C. H. C. Machado, Lúcia Galvão de Albuquerque

Bibliographic record

VenueAnimal Production Science · 2018
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicGenetic and phenotypic traits in livestock
Canadian institutionsBIO (Canada)University of Guelph
Fundersnot available
KeywordsHerdFixed effects modelBreedIce calvingRandom effects modelStatisticsDairy cattleTraitBiologyCluster analysisMathematicsBiotechnologyAnimal scienceLactationPanel dataMedicineComputer scienceGenetics

Abstract

fetched live from OpenAlex

In the present study, different random regression models, focussed on the nature of the effect of the contemporary group, fixed or random, were compared for genetic evaluation of test-day milk yield in dairy Gir breed, whose herds are characterised by relatively reduced numbers of cows. Cows were assigned to the same contemporary group if they were tested in the same herd, year and month. In one of the evaluated models, the contemporary group was investigated as a fixed effect and a clustering procedure was adopted to group herd-year subclasses in order to, at the end of the process, all contemporary groups contained at least three cows. The models were compared by the quality of fit, the accuracy of the predicted breeding values and their estimates of genetic parameters. The clustering procedure did not significantly improve the accuracy of predicted breeding values. Moreover, the fit to the data for this model was negatively affected. Therefore, this strategy should not be further implemented. The model including the herd-calving period effect and contemporary group treated as random effect showed similar characteristics to its equivalent, where the contemporary group was modelled as a fixed effect. However, the fit to the data for this model was slightly worse. Thus, the results suggest a random regression model including the herd-calving period effect and the fixed effect of contemporary group for the genetic evaluations of production traits in dairy Gir cattle. These findings could be extended to small dairy cattle populations whose herds are small-sized.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.001
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: none
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.542
Threshold uncertainty score0.231

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0010.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.131
GPT teacher head0.349
Teacher spread0.218 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations8
Published2018
Admission routes1
Has abstractyes

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