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Record W2847863984 · doi:10.1093/biosci/biy074

Variable Bibliographic Database Access Could Limit Reproducibility

2018· article· en· W2847863984 on OpenAlex

Why this work is in the frame

A frame that forgets how it found something cannot be audited. These are the routes that admitted this work.

affAt least one author lists a Canadian institution in the pinned OpenAlex snapshot.

Bibliographic record

VenueBioScience · 2018
Typearticle
Languageen
FieldComputer Science
TopicResearch Data Management Practices
Canadian institutionsMcGill UniversityUniversity of British Columbia
FundersU.S. Department of AgricultureNational Institutes of HealthNational Science Foundation
KeywordsReproducibilityLimit (mathematics)DatabaseComputer scienceVariable (mathematics)Information retrievalStatisticsMathematics

Abstract

fetched live from OpenAlex

Bibliographic databases provide access to scientific literature through targeted queries. The most common uses of these services, aside from accessing scientific literature for personal use, are to find relevant citations for formal surveys of scientific literature, such as systematic reviews or meta-analysis, or to estimate the number of publications on a certain topic as a measure of sampling effort. Bibliographic search tools vary in the level of access to the scientific literature they allow. For instance, Google Scholar is a bibliographic search engine which allows users to find (but not necessarily access) scientific literature for no charge, whereas other services, such as Web of Science, are subscription based, allowing access to full texts of academic works at costs that can exceed $100,000 annually for large universities (Goodman 2005). One of the most commonly used bibliographic databases, Clarivate Analytics–produced Web of Science, offers tailored subscriptions to their citation indexing service. This flexibility allows subscriptions and resulting access to be tailored to the needs of researchers at the institution (Goodwin 2014). However, there are issues created by this differential access, which we discuss further below.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.009
metaresearch head score (Gemma)0.005
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesScholarly communication, Open science
Consensus categoriesScholarly communication
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Not applicable · Consensus signal: none
GenreCandidate signal: Methods · Consensus signal: none
Teacher disagreement score0.783
Threshold uncertainty score0.995

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0090.005
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0010.018
Science and technology studies0.0010.001
Scholarly communication0.0060.068
Open science0.0110.006
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.211
GPT teacher head0.420
Teacher spread0.209 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it