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Big Data in Biosciences

2017· other· en· W2872913067 on OpenAlexaff
C. B. Dean, Shelley B. Bull, Khurram Nadeem, Mark A. Wolters

Bibliographic record

VenueWiley StatsRef: Statistics Reference Online · 2017
Typeother
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicGenetics, Bioinformatics, and Biomedical Research
Canadian institutionsCanadian Forest ServiceNatural Resources CanadaUniversity of TorontoWestern University
Fundersnot available
KeywordsBig dataData scienceComputer scienceContext (archaeology)AnalyticsWearable computerGeographyData mining

Abstract

fetched live from OpenAlex

Abstract We are in an information era when data are generated in masses: from devices that stream data in a health context, such as wearable fitness devices, to genomics data, to health exposure data from a variety of monitors that may be misaligned, and to earth observation data from satellites. The Big Data era in which we live is viewed as having the power to revolutionize society. The term big data has different meanings to different sectors: for engineers, for example, this term encompasses methods and tools for transmission of data faster, including wireless transmissions; for sociologists, it encompasses curation methods and techniques; for computer scientists, the term encompasses information management and security systems and analytics; and for statisticians, the term principally refers to data analytical techniques. This entry discusses challenges and opportunities in big data in biosciences exemplified through three important big data areas from health, environmental studies, and earth observation: human population genomics, forest fire analytics, and smoke estimation from satellite imagery.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.014
metaresearch head score (Gemma)0.042
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Not applicable · Consensus signal: Not applicable
GenreCandidate signal: Methods · Consensus signal: none
Teacher disagreement score0.045
Threshold uncertainty score0.150

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0140.042
Meta-epidemiology (narrow)0.0010.001
Meta-epidemiology (broad)0.0010.001
Bibliometrics0.0100.019
Science and technology studies0.0020.005
Scholarly communication0.0140.014
Open science0.0020.008
Research integrity0.0040.007
Insufficient payload (model declined to judge)0.0450.022

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.111
GPT teacher head0.378
Teacher spread0.267 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designNot applicable
Domainnot available
GenreMethods

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2017
Admission routes1
Has abstractyes

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