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A3978 miR-338–3p down-regulation was identified in small arteries of hypertensive patients with chronic kidney disease

2018· article· en· W2898842616 on OpenAlexaff
Olga Berillo, Ku-Geng Huo, Nada Mahjoub, Chantal Richer, Júlio C Fraulob-Aquino, Asia Rehman, Marie Briet, Pierre Boutouyrie, Mark L. Lipman, Daniel Sinnett, Pierre Paradis, Ernesto L. Schiffrin

Bibliographic record

VenueJournal of Hypertension · 2018
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicCancer-related molecular mechanisms research
Canadian institutionsUniversité de MontréalCentre Hospitalier Universitaire Sainte-JustineMcGill UniversityJewish General Hospital
Fundersnot available
KeywordsMedicinemicroRNAKidney diseaseBlood pressureInternal medicineGene expressionRenal functionRNAFold changeMessenger RNAPathophysiologyReal-time polymerase chain reactionGeneBioinformaticsEndocrinologyBiologyGenetics

Abstract

fetched live from OpenAlex

Objectives: Hypertension (HTN) and chronic kidney disease (CKD) are global health disorders that are epidemiologically associated. Vascular injury is an early manifestation in HTN and contributes to CKD. It is characterized by vascular dysfunction and remodeling and gene expression changes. MicroRNAs (miRs) are important non-coding RNA gene expression regulators, but their implication in vascular injury remains unclear. We aimed to identify differentially expressed (DE) miRs in small arteries of HTN and CKD human subjects to get insight into pathophysiological molecular mechanisms in these conditions. Methods: Normotensive, HTN (systolic blood pressure (BP) >135 mmHg or diastolic BP of 85–115 mmHg with BpTRU) and CKD subjects (estimated glomerular filtration rate < 60 mL/min/m2) (n = 15–16) were studied. Small arteries were isolated from subcutaneous gluteal biopsies and RNA extracted for small and total RNA sequencing using Illumina HiSeq-2500. EdgeR was used for differential expression analysis, TargetScan to predict DE miR targets in the DE mRNAs and reverse transcription-quantitative PCR (RT-qPCR) to confirm RNA differential expression and find vascular cells expressing these RNAs. Results: DE miRs were identified (P < 0.05) uniquely associated with HTN (3↑ and 6↓) and CKD (42↑ and 39↓) and in both groups (2↑). Correlation between RNA-sequencing and RT-qPCR data was demonstrated for 3 miRs (of 14 tested) including the down-regulated miR-338–3p uniquely associated with CKD (r = 0.91, P < 10–16). ACER2, CCL14 and GPX3 were predicted targets for this miR. miR-338–3p and its predicted targets were found to be expressed in endothelial cells. Conclusion: miR-338–3p down-regulation was found in small arteries uniquely associated with CKD.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: Observational
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.002
Threshold uncertainty score0.008

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0020.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.013
GPT teacher head0.229
Teacher spread0.217 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

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Citations0
Published2018
Admission routes1
Has abstractyes

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