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Record W2899668992 · doi:10.1093/neuonc/noy148.124

CBMT-05. ROLE OF THE let7-eEF2K AXIS IN MYC-DRIVEN MEDULLOBLASTOMA ADAPTATION TO NUTRIENT DEPRIVATION

2018· article· en· W2899668992 on OpenAlexaff
Alberto Delaidelli, Gian Luca Negri, Simran Sidhu, Marc Remke, Stefan M. Pfister, Michael D. Taylor, Gabriel Leprivier, Marcel Kool, Poul H. Sorensen

Bibliographic record

VenueNeuro-Oncology · 2018
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicMicroRNA in disease regulation
Canadian institutionsHospital for Sick Children
Fundersnot available
KeywordsmicroRNAUntranslated regionBiologyThree prime untranslated regionCancer researchMessenger RNAMolecular biologyGeneGenetics

Abstract

fetched live from OpenAlex

BACKGROUND/OBJECTIVES: MYC amplification in medulloblastoma (MB) determines highly aggressive disease, underscoring an urgent need for novel therapies. Let-7 microRNAs (miRNAs) inhibit tumor progression and regulate metabolism by degrading several mRNAs, including MYC. Let-7 miRNAs are frequently repressed in cancer, including MYC-driven MB. We previously reported that eukaryotic Elongation Factor-2 Kinase (eEF2K) is a pivotal regulator of MYC-driven tumor adaptation to nutrient deprivation (ND). Our data indicate that the eEF2K 3’ untranslated region (UTR) harbors a potential binding site for let-7. In addition, eEF2K mRNA and let-7 miRNA expression negatively correlates in MB, suggesting regulation of the former by the latter. We therefore hypothesized that let-7 down-regulation induces eEF2K expression in MB, thereby supporting MYC-driven MB adaptation to ND and tumor progression. Immunohistochemistry for eEF2K substrate (p-eEF2) was performed on MB tissue microarrays to link results with MYC expression and clinical outcome. Effects of eEF2K pharmacological inhibition on MB cell survival were evaluated in vitro by MTT assays. The ability of let-7 to degrade eEF2K mRNA was assessed by let-7 miRNAs transfection into MB cells, followed by RT-PCR and Western Blotting for eEF2K. Binding of let-7 to the eEF2K 3’UTR was validated by luciferase reporter assays. High eEF2K activity is linked to MYC over-expression and reduced survival in MB (p<0.05). Pharmacological inhibition of eEF2K significantly reduces survival of MYC-amplified MB cell lines under ND. Transfection let-7 miRNAs decreases eEF2K mRNA and protein levels (by ~40–50%) in MB cells. Down-regulation of luciferase activity by let-7 miRNAs is impaired upon mutation of the let-7 binding site on the eEF2K 3’UTR. Let-7 miRNAs degrade eEF2K mRNA, indicating that let-7 repression in MYC-driven MB is partially responsible for eEF2K increased levels and activity. Moreover, the let-7-eEF2K axis represents a critical mechanism for MYC-driven MB adaptation to ND, constituting a promising therapeutic target.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.014
Threshold uncertainty score0.048

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0010.000
Meta-epidemiology (broad)0.0010.000
Bibliometrics0.0010.000
Science and technology studies0.0010.000
Scholarly communication0.0010.000
Open science0.0010.001
Research integrity0.0010.002
Insufficient payload (model declined to judge)0.0140.004

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.010
GPT teacher head0.255
Teacher spread0.246 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2018
Admission routes1
Has abstractyes

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