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Record W2901503511 · doi:10.11646/phytotaxa.376.6.2

Sansevieria (Asparagaceae, Nolinoideae) is a herbaceous clade within Dracaena: inference from non-coding plastid and nuclear DNA sequence data

2018· article· en· W2901503511 on OpenAlexaff
RATIDZAYI TAKAWIRA-NYENYA, Ladislav Mucina, Warren Cardinal‐McTeague, Kevin R. Thiele

Bibliographic record

VenuePhytotaxa · 2018
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicPhytochemical Studies and Bioactivities
Canadian institutionsCanadian Museum of NatureUniversity of Ottawa
FundersRoyal Botanical Gardens, Kew
KeywordsBiologyMonophylyParaphylyCladeNdhFPhylogenetic treeBotanyMaximum parsimonyChloroplast DNAEvolutionary biologyPhylogeneticsGeneticsGene

Abstract

fetched live from OpenAlex

The evolutionary history of the dracaenoid genera Dracaena and Sansevieria (Asparagaceae, Nolinoideae) remains poorly resolved, despite long-recognised issues with their generic boundaries and increased attention paid by both horticulturalists and taxonomists. In this study we aim to: (1) elucidate evolutionary relationships within and between Dracaena and Sansevieria using molecular phylogenetic inference of both nuclear (nDNA) and plastid (cpDNA) markers, (2) examine the infrageneric classifications of each genus, and (3) revise the circumscription of the dracaenoids in light of morphological and phylogenetic evidence. In total, we sampled 21 accessions of Dracaena (ca. 19 species), 27 accessions of Sansevieria (ca. 26 species), and six outgroup taxa. Phylogenetic analyses were based on nucleotide sequences of two non-coding plastid DNA regions, the trnL-F region (trnL intron and trnL-trnF intergenic spacer) and rps16 intron, and the low-copy nuclear region At103. Phylogenetic hypotheses were constructed using maximum parsimony, maximum likelihood, and Bayesian inference. Individual datasets were analysed separately and, after testing for congruence, as combined datasets. We recovered instances of soft incongruence between nDNA and cpDNA datasets in Sansevieria, but general trends in the dracaenoids were congruent, although often poorly supported or resolved. The dracaenoids constitute a strongly supported monophyletic group. Dracaena was resolved as a paraphyletic grade embedded with two clades of Sansevieria, a primary clade comprising most species, and a secondary clade including S. sambiranensis, a distinctive species from Madagascar. The backbone of our phylogeny was only resolved in nDNA analyses, but combined analyses recovered strongly supported species groups. None of the previous infrageneric classifications were supported by our phylogeny, and biogeographic groupings were frequently more significant than morphology. More work is needed to resolve internal relationships in the dracaenoids, but we support a recent proposal to recognise a broadened circumscription of Dracaena that includes Sansevieria. We provide a generic description for the recircumscribed Dracaena and new combinations for several species of Sansevieria in Dracaena.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.001
metaresearch head score (Gemma)0.001
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: Observational
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.003
Threshold uncertainty score0.005

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0010.001
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0010.000
Bibliometrics0.0010.002
Science and technology studies0.0010.001
Scholarly communication0.0010.001
Open science0.0000.001
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0010.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.040
GPT teacher head0.295
Teacher spread0.255 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

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Citations22
Published2018
Admission routes1
Has abstractyes

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