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Record W2911298043 · doi:10.1002/xrs.3018

Advances in the histopathological characterization of breast tissue using combined X‐ray fluorescence and X‐ray diffraction data in a multivariate analysis approach

2019· article· en· W2911298043 on OpenAlexafffund
Eric M. Johnston, E. Han Dao, Michael Farquharson

Bibliographic record

VenueX-Ray Spectrometry · 2019
Typearticle
Languageen
FieldEngineering
TopicAdvanced X-ray and CT Imaging
Canadian institutionsMcMaster University
FundersNatural Sciences and Engineering Research Council of Canada
KeywordsDiffractionBreast tissueFluorescenceX-ray fluorescenceCharacterization (materials science)X-ray crystallographyMaterials scienceX-rayAnalytical Chemistry (journal)OpticsChemistryPhysicsMedicineBreast cancerNanotechnologyChromatographyInternal medicine

Abstract

fetched live from OpenAlex

Previous studies have shown that the combination of X‐ray fluorescence and X‐ray diffraction data can be used as a histopathological characterization tool for breast tissue. Recent advances in energy‐dispersive X‐ray fluorescence techniques have allowed for benchtop systems to produce useful results in a reasonable time frame, allowing for clinical implementation to be realized. Using a polarized energy‐dispersive X‐ray fluorescence and energy‐dispersive X‐ray diffraction system optimized for measuring soft tissues, 38 breast tissue samples (19 normal and 19 diseased) were interrogated. The measured elemental concentrations and adipose and fibrous tissue contents were used in a principal component analysis study to determine the variables that produced the most differentiation between the normal and diseased tissues. For each sample, a soft independent modeling of class analogy technique was utilized to create classification models using the K, Fe, and Zn concentration and adipose and fibrous tissue content of all other breast samples. The class model produced from both X‐ray fluorescence and X‐ray diffraction data correctly classified 31 of 38 samples with no false positives or false negatives, showing improvement from solely X‐ray fluorescence models or X‐ray diffraction models alone, and demonstrates the usefulness of such a technique.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.004
metaresearch head score (Gemma)0.004
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: none
GenreCandidate signal: Empirical · Consensus signal: none
Teacher disagreement score0.005
Threshold uncertainty score0.022

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0040.004
Meta-epidemiology (narrow)0.0010.001
Meta-epidemiology (broad)0.0010.001
Bibliometrics0.0050.003
Science and technology studies0.0000.001
Scholarly communication0.0020.001
Open science0.0010.001
Research integrity0.0010.001
Insufficient payload (model declined to judge)0.0010.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.012
GPT teacher head0.252
Teacher spread0.241 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations3
Published2019
Admission routes2
Has abstractyes

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