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Record W2912714670 · doi:10.1139/cjb-2018-0138

A molecular survey of <i>Ralfsia</i> sensu stricto (Ralfsiales, Phaeophyceae) in Canada uncovers three new species: <i>R</i>. <i>robertii</i> sp. nov., <i>R</i>. <i>tenebris</i> sp. nov., and <i>R</i>. <i>unimaculata</i> sp. nov.

2019· article· en· W2912714670 on OpenAlexaffvenueabout
Manuela I. Parente, Gary W. Saunders

Bibliographic record

VenueBotany · 2019
Typearticle
Languageen
FieldEarth and Planetary Sciences
TopicMarine and coastal plant biology
Canadian institutionsUniversity of New Brunswick
Fundersnot available
KeywordsSensu strictoSensuBiologyMonophylyGenusPhylogenetic treeZoologyBotanyTaxonomy (biology)CladeGenetics

Abstract

fetched live from OpenAlex

Currently there are three species (i.e., traditional morphospecies) in Canada assigned to the genus Ralfsia sensu lato, which we establish is not monophyletic even after excluding “species” now known to apply to alternate stages in the life histories of non-ralfsialean species. These species include R. fungiformis (Gunnerus) Setchell & N.L.Gardner and R. pacifica Hollenberg in the Pacific, and R. fungiformis and R. verrucosa (J.E.Areschoug) J.E.Areschoug in the Atlantic. However, a DNA barcode survey of Ralfsiales in Canada using the markers COI-5P and rbcL-3P revealed five genetic groups assignable to Ralfsia sensu stricto (i.e., includes only species assigned to this genus based on phylogenetic analyses). Further complicating matters, of the three species listed previously as occurring in Canada only the type species R. fungiformis is assignable to Ralfsia sensu stricto. Ralfsia pacifica and R. verrucosa did not group with the generitype and thus are not assignable to Ralfsia sensu stricto; further, they did not group with the family Ralfsiaceae. They will be presented in a subsequent manuscript. The four other genetic groups in Canada assignable to Ralfsia sensu stricto are new species of which three are described here: Ralfsia robertii sp. nov., Ralfsia tenebris sp. nov., and Ralfsia unimaculata sp. nov. The fourth consisted of a single sterile specimen from Haida Gwaii, British Columbia, and was not characterized.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: Observational
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.168
Threshold uncertainty score0.338

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0020.002
Science and technology studies0.0020.001
Scholarly communication0.0010.000
Open science0.0010.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0010.001

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.011
GPT teacher head0.182
Teacher spread0.171 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations7
Published2019
Admission routes3
Has abstractyes

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