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Record W2914720438 · doi:10.1080/23802359.2018.1547158

The complete mitochondrial genome of the North American pale summer sedge caddisfly <i>Limnephilus hyalinus</i> (Insecta: Trichoptera: Limnephilidae)

2019· article· en· W2914720438 on OpenAlexafffund
Harith Al-Baeity, Lauren S. Allard, Leanne Arreza, Theresa A. Asbury, Jahan Aubrey Bandayrel, Sipy Brar, Natassja Ellen Brien, Laura Chan, Katherine Chimney, Mari-Ann R. de Leon, Alejandra C. Farrell, Brittany A. Forsberg, Himesh Ghimire, Daniel Heschuk, Morgan L. Highfield, Darian T. Hole, Gladys M. Ilagan, Amanda Jantz, Moiz S. Kapasi, Oliver E. Ko, Emily Krupka, Cassie Lemon, Paulette E. Luna, Courtney Lynn Marshall, Lucky Princia Mucowinka, Trevor W. Oleniuk, Michaela C. L. Palmer, Ivan Paskvalin, Melissa Rodrigues, Kailee A. Rutherford, Maria Sachs, Renee K. S. Stokowski, Daniel Sullivan, Renee R. Taillieu, Matsya R. Thulasiram, Justin H. Tsang, Cobi E. Wiwchar, Jennifer M. Wray, Jeffrey M. Marcus

Bibliographic record

VenueMitochondrial DNA Part B · 2019
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicGenomics and Phylogenetic Studies
Canadian institutionsUniversity of Manitoba
FundersNatural Sciences and Engineering Research Council of Canada
KeywordsCaddisflyBiologyMitochondrial DNAMonophylyPhylogenetic treeGenusZoologyEvolutionary biologyGeneBotanyGeneticsLarvaClade

Abstract

fetched live from OpenAlex

The pale summer sedge caddisfly, Limnephilus hyalinus Hagen, 1861 (Limnephilidae, the Northern Caddisflies), is widespread in North America. Genome skimming by Illumina sequencing allowed assembly of a complete 15,168 bp circular mitogenome from L. hyalinus consisting of 78.0% AT nucleotides, 22 tRNAs, 13 protein-coding genes, two rRNAs and a control region in the ancestral insect gene order. Limnephilus hyalinus COX1 features an atypical CGA start codon while ATP8, NAD1, NAD5, and NAD6 exhibit incomplete stop codons. The mtTERM binding site is conserved between the Trichoptera and the Lepidoptera. Phylogenetic reconstruction reveals a monophyletic Order Trichoptera, Family Limnephilidae, and genus Limnephilus.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesMeta-epidemiology (narrow)
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: none
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.927
Threshold uncertainty score1.000

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0010.000
Bibliometrics0.0000.000
Science and technology studies0.0000.001
Scholarly communication0.0000.000
Open science0.0010.001
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.011
GPT teacher head0.209
Teacher spread0.198 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations8
Published2019
Admission routes2
Has abstractyes

Explore more

Same venueMitochondrial DNA Part BSame topicGenomics and Phylogenetic StudiesFrench-language works237,207