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Record W2916163235 · doi:10.1139/cjps-2018-0195

Cloning, prokaryotic expression, and subcellular localisation of the <i>TaMAPK10-like</i> gene in common wheat

2019· article· en· W2916163235 on OpenAlexvenueno aff
Yingbin Nie, Songmei Ma, Wanquan Ji

Bibliographic record

VenueCanadian Journal of Plant Science · 2019
Typearticle
Languageen
FieldAgricultural and Biological Sciences
TopicPlant-Microbe Interactions and Immunity
Canadian institutionsnot available
FundersNational Natural Science Foundation of China
KeywordsBiologyGeneGeneticsGene expressionFusion proteinProtein kinase AMAPK/ERK pathwaySubcellular localizationOpen reading frameMolecular biologyKinaseCell biologyPeptide sequenceRecombinant DNA

Abstract

fetched live from OpenAlex

Mitogen-activated protein kinase (MAPK/MPK) is a group of serine-threonine protein kinases that are activated by different extracellular stimuli. To explore the function of MAPK in wheat infected with powdery mildew, a new wheat germplasm N9134 was used to obtain the full-length MAPK gene and the MAPK sequence was used to identify its prokaryotic expression and subcellular localisation. Wheat MAPK was obtained by homologous gene cloning and designated as TaMAPK10-like. The open reading frame of TaMAPK10-like was 1638 bp, which coded a deduced protein of 545 amino acids. Phylogenetic analysis revealed that TaMAPK10-like was most closely related to MAPK10-like of Aegilops tauschii at the protein level. It had high nucleotide similarity with the reported MAPK gene in A. tauschii, Sorghum bicolor, and Setaria italica, and had features typical of MAPK family genes. Subcellular localisation showed that TaMAPK10-like was mainly located in the cytoplasm along the microtubules, and a small number were located in the cell membrane and the nucleus. A pMD-MAPK10-like fusion expression vector was constructed and the TaMAPK10-like fusion protein was 70 kDa. The expressions of protein in bacteria were best obtained using 0.5 mmol L−1 isopropyl β-d-1-thiogalactopyranoside at 37 °C for 12 h. These results provide the basic data for further understanding the biological function of the TaMAPK10-like gene.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.002
Threshold uncertainty score0.004

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.001
Insufficient payload (model declined to judge)0.0010.001

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.011
GPT teacher head0.182
Teacher spread0.171 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations2
Published2019
Admission routes1
Has abstractyes

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