Patterns of Codon Usage Bias in WRKY Genes of Brassica rapa and Arabidopsis thaliana
Bibliographic record
Abstract
Codon usage bias (CUB) is defined as the selective and nonrandom use of synonymous codons by the organism for encoding the amino acids. One of the important plant transcription factor family is the ‘WRKY’ whose role has been investigated in the regulation of abiotic and biotic stress responses in plants. In this paper, the codon usage pattern of the WRKY transcription factor of the two important plant species Arabidopsis thaliana and Brassica rapa has been investigated. Various codon usage indices like ENc, CAI, correspondence analysis, RSCU analysis, neutrality plot and hierarchial clustering has been done. The GC codon status was high in Arabidopsis. The RSCU analysis of codons revealed that codons coding for arginine was maximum in both the plant species.Our results propose that natural selection was the main dominating factor guiding the evolution of different WRKY genes in both Arabidopsis thaliana and Brassica rapa.
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How this classification was reachedexpand
Full frame distilled prediction
Teacher imitationNot calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.
Codex and Gemma teacher scores by category
| Category | Codex | Gemma |
|---|---|---|
| Metaresearch | 0.000 | 0.000 |
| Meta-epidemiology (narrow) | 0.000 | 0.000 |
| Meta-epidemiology (broad) | 0.000 | 0.000 |
| Bibliometrics | 0.000 | 0.000 |
| Science and technology studies | 0.000 | 0.000 |
| Scholarly communication | 0.000 | 0.000 |
| Open science | 0.000 | 0.000 |
| Research integrity | 0.000 | 0.000 |
| Insufficient payload (model declined to judge) | 0.000 | 0.000 |
Machine scores (provisional)
The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.
Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.
score_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from itClassification
machine, unvalidatedMachine predicted; a candidate call from one teacher head, not a consensus.
How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".