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Record W2922162594 · doi:10.1161/atvb.38.suppl_1.385

Abstract 385: Ultracentrifugation and Depletion Methods of High-density Lipoprotein Isolation Yield Particles That Are Functionally Distinct in Some of Their Vasoprotective Functions

2018· article· en· W2922162594 on OpenAlexaff
Emily B. Button, Jérôme Robert, Megan Gilmour, Harleen K. Cheema, Cheryl L. Wellington

Bibliographic record

VenueArteriosclerosis Thrombosis and Vascular Biology · 2018
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicMetabolomics and Mass Spectrometry Studies
Canadian institutionsSt. Jerome's UniversityUniversity of British Columbia
Fundersnot available
KeywordsVasoprotectiveHigh-density lipoproteinUltracentrifugeCholesterolInflammationLipoproteinChemistryPolyethylene glycolSphingomyelinFunction (biology)EndocrinologyChromatographyInternal medicineBiochemistryMedicineCell biologyNitric oxideBiology

Abstract

fetched live from OpenAlex

The evaluation of the functional capabilities of high-density lipoproteins (HDL) has been shown to be a better predictor of several cardiometabolic diseases than the traditional marker of plasma HDL cholesterol. An important, yet often unconsidered, factor in clinically evaluating HDL function is the method used to purify HDL from plasma. It has been shown that the method of HDL isolation can impact the composition of the HDL produced yet the effect of these compositional changes on HDL function has been explored very little. The evaluation of isolation method is especially important when studying novel HDL functions, such as the vasoprotective functions relevant to Alzheimer’s disease (AD) recently discovered on brain vascular cells and in 3-dimensional brain vessel models. We compared the high-throughput HDL isolation method of polyethylene glycol (PEG) precipitation to the more time-consuming but purer method of sequential density gradient ultracentrifugation (UC) in several of these novel, brain-relevant vasoprotective functions. HDL isolated from young, healthy human plasma by PEG precipitation and UC were equal in their capacity for effluxing cholesterol from macrophages, suppressing TNFα-induced inflammation in brain endothelial cells, and preventing the pathological accumulation of the AD protein amyloid beta (Aβ) in 3D vessel models. However, only HDL isolated by UC, and not PEG precipitation, could induce nitric oxide production and inhibit Aβ-induced inflammation in brain endothelial cells. These findings highlight the importance of HDL isolation method in the composition and function of the HDL produced. Furthermore, that HDL isolation method affected some but not all HDL functions shows that HDL may act on brain vascular cells to protect against AD through more than one pathway.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.001
metaresearch head score (Gemma)0.001
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.003
Threshold uncertainty score0.011

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0010.001
Meta-epidemiology (narrow)0.0010.000
Meta-epidemiology (broad)0.0000.001
Bibliometrics0.0010.001
Science and technology studies0.0000.000
Scholarly communication0.0010.001
Open science0.0010.001
Research integrity0.0010.001
Insufficient payload (model declined to judge)0.0030.002

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.036
GPT teacher head0.279
Teacher spread0.243 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2018
Admission routes1
Has abstractyes

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