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Record W2922294826 · doi:10.1093/jcag/gwz006.253

A254 IDENTIFICATION OF THE TLR-LIKE RECEPTOR CD180 AND THE ACCESSORY MOLECULE MD-1 DUCK HOMOLOGUES FOR THERAPEUTIC TARGETING IN THE DUCK HEPATITIS B INFECTION MODEL

2019· article· en· W2922294826 on OpenAlexaff
Qingxia Yao, Young Zhou, K P Fishcer, D. Lorne Tyrrell, Klaus S. Gutfreund

Bibliographic record

VenueJournal of the Canadian Association of Gastroenterology · 2019
Typearticle
Languageen
FieldMedicine
TopicHepatitis B Virus Studies
Canadian institutionsUniversity of Alberta
Fundersnot available
KeywordsComplementary DNABiologyMolecular biologyAntigenAntibodyVirologyOpen reading frameReceptorclone (Java method)Peptide sequenceGeneImmunologyBiochemistry

Abstract

fetched live from OpenAlex

Hepatitis B infection is a leading cause of liver disease with over 240 million chronic carriers. Current protective vaccines elicit protective immune responses in up to 95% of healthy adults but are poorly immunogenic in immunocompromised individuals and there are currently no effective therapeutic vaccines available. CD180, also known as radioprotective 105 kDa protein (RP105), is a Toll-like receptor (TLR), type-1 glycoprotein expressed on antigen presenting cells (APC) in complex with the accessory molecule MD-1. Engagement of antibodies with CD180 promotes proliferation of B cells, and targeting of antigen to CD180 has been shown to enhance antigen-specific B cell and T cell responses. The aim of this project is to clone the duck CD180 and MD-1 cDNA and to characterize the expressed protein. The duck CD180 (duCD180) and duck MD-1 (duMD-1) cDNAs were obtained by RT-PCR and RACE. The open reading frame of duMD-1 and duCD180 were inserted in eukaryotic expression vectors in frame with distinct carboxy- and amino-terminal purification/detection tags, and expression was verified in 293T cells by immunoblot. The duCD180 cDNA encodes a 660 amino acid (aa) protein that has an aa identity of 52%, 49% and 81% with the respective human, mouse and chicken homologues, whereas the duMD-1 cDNA encodes a 161 aa protein that has an aa identity of 42%, 42% and 84% with human, mouse and chicken MD-1, respectively. Using anti-His6/anti-FLAG antibodies duCD180 and duMD-1 were detected in cell lysates but not culture supernatants of transfected 293T cells. Our observations suggest significant evolutionary conservation of both CD180 and MD-1 between mammalian and avian homologue proteins. This project will lay the foundation for exploration of CD180-targed immunization studies in the duck hepatitis B infection model. internal funding

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.002
Threshold uncertainty score0.005

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.001
Insufficient payload (model declined to judge)0.0020.001

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.012
GPT teacher head0.248
Teacher spread0.236 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2019
Admission routes1
Has abstractyes

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Same venueJournal of the Canadian Association of GastroenterologySame topicHepatitis B Virus StudiesFrench-language works237,207