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Record W2924551033 · doi:10.21037/atm.2019.01.70

Orphan noncoding RNAs: novel regulators and cancer biomarkers

2019· letter· en· W2924551033 on OpenAlexafffund
Mona Teng, Lydia Liu, Junjie T. Hua, Sujun Chen, Housheng Hansen He

Bibliographic record

VenueAnnals of Translational Medicine · 2019
Typeletter
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicCancer-related molecular mechanisms research
Canadian institutionsOntario Institute for Cancer ResearchUniversity of TorontoUniversity Health NetworkPrincess Margaret Cancer Centre
FundersCanadian Institutes of Health ResearchUniversity of TorontoPrincess Margaret Cancer Foundation
KeywordsBiologyComputational biologyGeneReprogrammingmicroRNANon-coding RNALong non-coding RNAGenomeGeneticsRegulation of gene expressionHuman genomeCancerRNABioinformatics

Abstract

fetched live from OpenAlex

The transformation of normal tissue to malignant tumours is driven by the widespread reprogramming of gene expression. Historically, the majority of research efforts have focused on the alternations of protein-coding genes as they were thought to be the only biologically functional feature in the human genome. Consequently, transcripts from the noncoding regions were viewed as transcriptional noise and overlooked despite reports of their aberrant expression in various cancers (1,2). In the past decade through emerging technologies, studies began to reveal that noncoding RNAs (ncRNAs) can also have important biological functions and are implicated in diverse cellular processes and disease progressions (3-5). Ever since, ncRNAs have gained significant research interest and a large number of studies have been conducted to elucidate their functions and roles.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.001
metaresearch head score (Gemma)0.002
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Not applicable · Consensus signal: Not applicable
GenreCandidate signal: Commentary · Consensus signal: Commentary
Teacher disagreement score0.005
Threshold uncertainty score0.013

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0010.002
Meta-epidemiology (narrow)0.0010.000
Meta-epidemiology (broad)0.0010.000
Bibliometrics0.0000.000
Science and technology studies0.0010.002
Scholarly communication0.0010.002
Open science0.0010.001
Research integrity0.0050.006
Insufficient payload (model declined to judge)0.0040.003

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.056
GPT teacher head0.351
Teacher spread0.295 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designNot applicable
Domainnot available
GenreCommentary

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations2
Published2019
Admission routes2
Has abstractyes

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