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Record W2937741582 · doi:10.1007/s11568-010-9143-0

HGM 2010 Programme / Abstract

2010· article· en· W2937741582 on OpenAlex

Why this work is in the frame

A frame that forgets how it found something cannot be audited. These are the routes that admitted this work.

fundA Canadian funder is recorded on the work.
no affNo Canadian affiliation: this work is invisible to an affiliation-only frame.
No Canadian affiliation. An affiliation-only frame, the usual design, would never have seen this work. It is one of the works that make the case for inverting the frame.

Bibliographic record

VenueThe HUGO Journal · 2010
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicDNA and Biological Computing
Canadian institutionsnot available
FundersBiocenter, University of OuluMedical Research CouncilTerveyden ja hyvinvoinnin laitosUniversité de MontréalRetina FranceInstitut de Cardiologie de MontréalTurun Yliopistollinen KeskussairaalaKing Abdullah University of Science and TechnologyRIKENUnion Nationale des Aveugles et Déficients VisuelsCardiff UniversityMassachusetts General HospitalGénome QuébecUniversity of EdinburghUniversity of California, San DiegoOulun YliopistoBroad InstituteTampereen YliopistoTurun YliopistoCold Spring Harbor LaboratoryImperial College LondonUniversity of DundeeHelsingin ja Uudenmaan SairaanhoitopiiriTaysUniversity of the Western CapeWellcome TrustHelsingin Yliopisto
KeywordsComputer science

Abstract

fetched live from OpenAlex

Work towards an 8-bit engineered genetic combinatorial counter Modest information storage systems implemented inside living cells would enable new approaches for researching and controlling biological processes such as development, cancer, and aging. Our current capacity to engineer and operate genetically encoded information storage systems is quite limited. Specific limitations include the lack of sufficient molecular components to build with, rules of composition supporting device and system integration, an understanding for how to implement reliable behavior given thermal noise at the molecular scale, and an understanding for how to engineer reliable systems that evolve. I'll introduce applications of genetic information storage systems, review past and current accomplishments from the field, introduce our experimental work on composable set/reset latches built with serine recombinases, and our theoretical work on a framework supporting the engineering of higher-order information storage systems. Given that an 8-bit counter likely requires the successful integration of at least 10-fold more components than any existing engineered genetic system, I'll also discuss the current state of, and needs regarding, foundational tools supporting genetic engineering.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.001
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: none
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.754
Threshold uncertainty score0.211

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0010.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.022
GPT teacher head0.262
Teacher spread0.239 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it