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Record W2939626212 · doi:10.1109/icassp.2019.8683433

Multiple-graph Recurrent Graph Convolutional Neural Network Architectures for Predicting Disease Outcomes

2019· article· en· W2939626212 on OpenAlexaff
Juliette Valenchon, Mark Coates

Bibliographic record

Venuenot available
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicBioinformatics and Genomic Networks
Canadian institutionsMcGill University
Fundersnot available
KeywordsComputer scienceGraphSoftware deploymentMachine learningDiseaseArtificial intelligenceConvolutional neural networkRecurrent neural networkArtificial neural networkTheoretical computer scienceMedicine

Abstract

fetched live from OpenAlex

Improving disease outcome prediction can greatly aid in the strategic deployment of secondary prevention approaches. We develop a method to predict the evolution of diseases by taking into account personal attributes of the subjects and their relationships with medical examination results. Our approach builds upon a recent formulation of this problem as a graph-based geometric matrix completion task. The primary innovation is the introduction of multiple graphs, each relying on a different combination of subject attributes. Via statistical significance tests, we determine the relevant graph(s) for each medically-derived feature. We then employ a multiple-graph recurrent graph convolutional neural network architecture to predict the disease outcomes. We demonstrate the efficacy of the technique by addressing the task of predicting the development of Alzheimer's disease for patients exhibiting mild cognitive impairment, showing that the incorporation of multiple graphs improves predictive capability.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: Observational
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.379
Threshold uncertainty score0.616

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.008
GPT teacher head0.233
Teacher spread0.225 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations25
Published2019
Admission routes1
Has abstractyes

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