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Record W2944924790 · doi:10.7554/elife.46205

Cretaceous dinosaur bone contains recent organic material and provides an environment conducive to microbial communities

2019· article· en· W2944924790 on OpenAlexafffund
Evan T. Saitta, Renxing Liang, Maggie C. Y. Lau, Caleb M. Brown, Nicholas R. Longrich, Thomas G. Kaye, Ben J. Novak, Steven L. Salzberg, Mark A. Norell, Geoffrey D. Abbott, Marc R. Dickinson, Jakob Vinther, Ian D. Bull, Richard A. Brooker, Peter Martin, Paul Donohoe, Timothy Knowles, Kirsty Penkman, T. C. Onstott

Bibliographic record

VenueeLife · 2019
Typearticle
Languageen
FieldEarth and Planetary Sciences
TopicPaleontology and Evolutionary Biology
Canadian institutionsRoyal Tyrrell Museum
FundersNational Institute of General Medical SciencesNational Human Genome Research InstituteUniversity of TorontoSight Research UKLeverhulme TrustUniversity of BristolNatural Environment Research CouncilPrinceton UniversityYale University
KeywordsTaphonomyBiomineralizationMicrobial population biologyAmplicon sequencingOrganic matterCretaceousBone matrixSedimentary rockMicrobiomeFossilizationGeologyPaleontologyBiologyChemistryEcologyBacteria16S ribosomal RNAAnatomy

Abstract

fetched live from OpenAlex

Fossils were thought to lack original organic molecules, but chemical analyses show that some can survive. Dinosaur bone has been proposed to preserve collagen, osteocytes, and blood vessels. However, proteins and labile lipids are diagenetically unstable, and bone is a porous open system, allowing microbial/molecular flux. These 'soft tissues' have been reinterpreted as biofilms. Organic preservation versus contamination of dinosaur bone was examined by freshly excavating, with aseptic protocols, fossils and sedimentary matrix, and chemically/biologically analyzing them. Fossil 'soft tissues' differed from collagen chemically and structurally; while degradation would be expected, the patterns observed did not support this. 16S rRNA amplicon sequencing revealed that dinosaur bone hosted an abundant microbial community different from lesser abundant communities of surrounding sediment. Subsurface dinosaur bone is a relatively fertile habitat, attracting microbes that likely utilize inorganic nutrients and complicate identification of original organic material. There exists potential post-burial taphonomic roles for subsurface microorganisms.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesInsufficient payload (model declined to judge)
Consensus categoriesInsufficient payload (model declined to judge)
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: Observational
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.071
Threshold uncertainty score1.000

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0070.001

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.015
GPT teacher head0.201
Teacher spread0.186 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; both teacher heads agree on what is shown here.

Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations62
Published2019
Admission routes2
Has abstractyes

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