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S1613 ALLOGENEIC HEMATOPOIETIC CELL TRANSPLANTATION CAN ABROGATE INCREASING RISK OF RELAPSE FROM PERSISTENT MUTATIONS MEASURED BY TARGETED SEQUENCING AT REMISSION IN NORMAL KARYOTYPE ACUTE MYELOID LEUKEMIA

2019· article· en· W2949420727 on OpenAlexaff
T. Kim, Jae‐Sook Ahn, Sun‐Ah Jung, Seo Yeon Ahn, S.‐Y. Jung, Yang Dai-qin, J.‐J. Lee, Seung Kyu Choi, Jee‐Young Lee, H.Y. Lee, Sangwoo Park, Kyoung A. Kim, Yifeng Cai, Z. Zhang, H.‐J. Kim, D.D.H. Kim

Bibliographic record

VenueHemaSphere · 2019
Typearticle
Languageen
FieldMedicine
TopicAcute Myeloid Leukemia Research
Canadian institutionsPrincess Margaret Cancer CentreUniversity of Toronto
Fundersnot available
KeywordsOncologyCumulative incidenceMedicineInternal medicineHazard ratioMinimal residual diseaseMyeloid leukemiaProportional hazards modelHematopoietic stem cell transplantationTransplantationMyeloidLeukemiaImmunologyConfidence interval

Abstract

fetched live from OpenAlex

Background: Normal karyotype acute myeloid leukemia (NK AML) currently does not have a universal measurable residual disease (MRD) target, thus making next generation sequencing (NGS) more attractive as an MRD monitoring tool. Also, there is limited knowledge on selecting consolidation therapy based on the MRD status at time of first achievement of complete remission (CR1) in NK AML between allogeneic hematopoietic cell transplantation (allo‐HCT) and chemotherapy. Aims: Current study aims to investigate the impact of type of consolidation therapy on the long‐term outcomes according to the NGS‐based MRD status at CR1 in NK AML Methods: A total of 139 patients diagnosed with NK‐AML, treated, and achieved CR1 were included in this study. Paired bone marrow or peripheral blood samples were obtained at diagnosis and at CR1. Using a panel of 45 genes commonly mutated in AML, 278 samples were sequenced using Illumina Hiseq 2500 followed by variant calling procedures (Avg. on‐target coverage 895x).Treatment outcomes were evaluated in terms of overall survival (OS), relapse free survival (RFS), and cumulative incidence of relapse (CIR). The prognostic impact of risk factors for OS, RFS, and CIR was determined using Mantel‐Byar test, which is a Cox proportional hazard model considering time‐dependent covariates, and Fine‐Gray proportional hazard regression model considering competing events. Variant allele frequency (VAF) of 0.2% was defined as minimum sensitivity to detect MRD and as MRD pos given the mutation was present at diagnosis. Results: Of 139 patients, 124 patients (89.2%) carried 363 mutations at diagnosis and 15 patients without detected mutations were excluded from further analyses. At CR1, 72/124 patients carried 121 persistent mutations over 0.2% (Fig A). Mutations in genes associated with DNA methylation such as DNMT3A (n = 33/40), followed by IDH2 (n = 13/21), and TET2 (n = 10/15) were highly persistent. In contrary, mutations in NPM1 and signaling related genes show lower frequency of persistence (n = 4/49 and n = 12/70). As mutations in DNMT3A , TET2 , and ASXL1 are often associated with age‐related clonal hematopoiesis, they were excluded in MRD assessment. Based on MRD status (50 positive and 74 negative cases) and the type of consolidation therapy they are treated with (65 with allo‐HCT and 59 with chemotherapy only), we performed subgroup analyses (Fig B).In univariate analyses on the entire cohort, MRD status at CR1 did not affect long‐term outcome, while allo‐HCT was associated with a better RFS (p = 0.009), a lower CIR (p = 0.008) and, a trend of better in OS. We further stratified the cohort into 4 subgroups based on the two factors (i.e. MRD status at CR1 and the type of consolidation therapy). Most notably, for MRD pos patients, the benefit of allo‐HCT became more apparent in terms of RFS (p = 0.002), CIR (p = 0.002), and OS ( p = 0.011) (Fig C). In contrast, this benefit from allo‐HCT over chemotherapy was not observed in MRD neg group (Fig D). Multivariate analyses confirmed that allo‐HCT was an independent favorable prognostic factor for OS (Hazard Ratio (HR); 0.33, p = 0.011), RFS (HR; 0.28, p = 0.002) and CIR (HR; 0.20, p = 0.002) in the MRD pos group. Summary/Conclusion: NGS‐based MRD pos patients at CR1 show better long‐term outcome when received allo‐HCT as consolidation therapy while no survival difference was observed regardless of type of consolidation therapy in MRD neg patients. The present study highlights urgent demand for the development of a decision‐making algorithm for selection of consolidation therapy according to NGS‐based MRD status at CR1 in NK AML. image

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.001
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesMeta-epidemiology (narrow)
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.059
Threshold uncertainty score1.000

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0010.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0010.000
Bibliometrics0.0000.001
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.001
Insufficient payload (model declined to judge)0.0010.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.011
GPT teacher head0.236
Teacher spread0.225 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

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Citations2
Published2019
Admission routes1
Has abstractyes

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