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Record W2950530125 · doi:10.48550/arxiv.1101.1663

Linear Conjugacy of Chemical Reaction Networks

2011· preprint· en· W2950530125 on OpenAlexaff
Matthew D. Johnston, David Siegel

Bibliographic record

VenuearXiv (Cornell University) · 2011
Typepreprint
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicGene Regulatory Network Analysis
Canadian institutionsUniversity of Waterloo
Fundersnot available
KeywordsOrdinary differential equationConjugacy classAction (physics)Network dynamicsWork (physics)MathematicsChemical DynamicsComputer scienceDynamics (music)PhenomenonDifferential equationStatistical physicsPure mathematicsDiscrete mathematicsPhysicsMathematical analysisChemical physicsThermodynamics

Abstract

fetched live from OpenAlex

Under suitable assumptions, the dynamic behaviour of a chemical reaction network is governed by an autonomous set of polynomial ordinary differential equations over continuous variables representing the concentrations of the reactant species. It is known that two networks may possess the same governing mass-action dynamics despite disparate network structure. To date, however, there has only been limited work exploiting this phenomenon even for the cases where one network possesses known dynamics while the other does not. In this paper, we bring these known results into a broader unified theory which we call conjugate chemical reaction network theory. We present a theorem which gives conditions under which two networks with different governing mass-action dynamics may exhibit the same qualitative dynamics and use it to extend the scope of the well-known theory of weakly reversible systems.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesMeta-epidemiology (narrow)
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Simulation or modeling · Consensus signal: none
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.279
Threshold uncertainty score1.000

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.001
Research integrity0.0010.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.038
GPT teacher head0.181
Teacher spread0.143 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

Study designSimulation or modeling
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations1
Published2011
Admission routes1
Has abstractyes

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