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Record W2953734013 · doi:10.1080/14397595.2019.1637593

Human leukocyte antigen in Japanese patients with idiopathic inflammatory myopathy

2019· article· en· W2953734013 on OpenAlexfundno aff
Hiroshi Furukawa, Shomi Oka, Aya Kawasaki, Misaki Hidaka, Kota Shimada, Yuya Kondo, Atsushi Ihata, Takashi Matsushita, Takumi Matsumoto, Atsushi Hashimoto, Isao Matsumoto, Akiko Komiya, Kouji Kobayashi, Atsumu Osada, Masao Katayama, Akira Okamoto, Keigo Setoguchi, Hajime Kono, Yasuhito Hamaguchi, Toshihiro Matsui, Naoshi Fukui, Hiroaki Tamura, Kazuhiko Takehara, Shouhei Nagaoka, Shoji Sugii, Takayuki Sumida, Naoyuki Tsuchiya, Shigeto Tohma

Bibliographic record

VenueModern Rheumatology · 2019
Typearticle
Languageen
FieldMedicine
TopicInflammatory Myopathies and Dermatomyositis
Canadian institutionsnot available
FundersJapan Society for the Promotion of ScienceEisai CanadaAstellas Foundation for Research on Metabolic DisordersAbbott JapanAstellas Pharma US
KeywordsMedicinePolymyositisDermatomyositisOdds ratioInternal medicineGastroenterologyHLA-DRB1Confidence intervalHuman leukocyte antigenGenotypingImmunologyAlleleAntigenGenotypeGeneGenetics

Abstract

fetched live from OpenAlex

Objective: The human leukocyte antigen (HLA) is the strongest genetic risk factor for idiopathic inflammatory myopathy (IIM), and different HLA alleles have been reported to be associated with IIM susceptibility among different ethnic groups. In this study, we have investigated HLA alleles associated with IIM in Japanese patients. Methods: Genotyping of HLA-DRB1 and DPB1 were performed in 252 Japanese IIM patients (166 dermatomyositis [DM] and 86 polymyositis [PM] patients) and the association was analyzed with comparison to controls (n = 1026 for DRB1 and n = 413 for DPB1). Results:DRB1*08:03 was associated with IIM (p = 1.60 × 10−5, pc = .0005, odds ratio [OR] 2.11, 95% confidence interval [CI] 1.52–2.92) and DM (p = .0004, pc = .0128, OR 2.06, 95%CI 1.40–3.02). DPB1*05:01 was also associated with IIM (p = .0001, pc = .0021, OR 1.96, 95%CI 1.38–2.77) and DM (p = .0005, pc = .0075, OR 2.05, 95%CI 1.37–3.08). DRB1*09:01 (p = .0012, pc = .0368, OR 0.35, 95% CI 0.18–0.69) and DPB1*04:01(p = .0004, pc = .0057, OR 0.05, 95% CI 0.00–0.85) were protectively associated with PM. Two locus analyses suggested that DRB1*09:01 and DPB1*04:01 were independently associated with PM. Conclusion: Protective associations of HLA were detected in Japanese PM patients.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesMeta-epidemiology (narrow)
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: Observational
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.008
Threshold uncertainty score1.000

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0010.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.001

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.004
GPT teacher head0.211
Teacher spread0.206 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations8
Published2019
Admission routes1
Has abstractyes

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