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Record W2954057211

Adsorption and Self-assembly of Proteins at Chemically Modified Surfaces

2014· dissertation· en· W2954057211 on OpenAlexfundno aff
Shohreh Zahedijasbi

Bibliographic record

VenueYorkSpace (York University) · 2014
Typedissertation
Languageen
FieldEngineering
TopicMolecular Junctions and Nanostructures
Canadian institutionsnot available
FundersYork University
KeywordsBovine serum albuminAdsorptionDesorptionMonolayerChemistryForce spectroscopySelf-assembled monolayerDielectric spectroscopySelf-assemblyBiophysicsMatrix-assisted laser desorption/ionizationAnalytical Chemistry (journal)MoleculeCrystallographyMaterials scienceChromatographyElectrochemistryNanotechnologyBiochemistryBiologyElectrodeOrganic chemistryPhysical chemistry
DOInot available

Abstract

fetched live from OpenAlex

Our research is mostly focused on the subject of adsorption and self-assembly of proteins at modified surfaces. We employed atomic force microscopy (AFM) to study bovine serum albumin (BSA) and insulin adsorption at 1-decene- and methyl 10-undecenoate-modified Si(111) substrates. The results were compared to matrix-assisted laser desorption/ionization-mass spectroscopy (MALDI-MS) data previously published in the Morin group. The MALDI-MS spectra showed a big insulin signal, while BSA was not detected for 1 mg/mL BSA and 10% saturated insulin solutions. Our AFM images revealed considerable BSA adsorption, whereas it was not possible to observe insulin molecules. This clearly shows that in addition to the low quantity of the protein, a stronger interaction between the surface and the protein may result in a weak MALDI-MS signal and prevent quantitative analysis using this technique. 
\nSelf-assembled monolayers on Au surfaces were used to investigate the oligomerization of truncated K122-4 (ΔK122-4) pilins into a new protein nanostructure. Employing AFM, we observed that at hydrophobic layers, with more than 10-30% accessible hydrophobic component, ΔK122-4 pilins oligomerize to a nanoweb. 
\nTo differentiate the structure of ΔK122-4 nanoweb from the aggregation of the pilins at hydrophilic surfaces, electrochemical impedance spectroscopy was employed. Through equivalent circuit fitting, capacitance values of 3.7 ± 0.4 μF/cm2 and 2.5 ± 0.2 μF/cm2 were obtained for the aggregated pilins and the web pattern, respectively. Because of the higher average thickness of the former layer, this could support the presence of water in this layer. A dielectric constant (ε) of 5.1 ± 0.7 was obtained for the nanoweb. This low value could indicate a more compact and ordered assembly.
\nFinally, conductive protein nanotube (PNTs) fabrication was performed by electroless copper deposition at ΔK122-4 PNTs in aqueous solution. The nanostructures were catalyzed by PdCl42-. At least 20% of the accessible amino acids of the PNTs have S-, N- and O-donor side chains which are able to form a complex with Pd(II). Metallization was verified using scanning electron microscopy (SEM).

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesMeta-epidemiology (narrow)
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.170
Threshold uncertainty score1.000

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.004
GPT teacher head0.163
Teacher spread0.159 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2014
Admission routes1
Has abstractyes

Explore more

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