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Abstract 2851: The effects of nidogen-1 on proliferation and migration in claudin-low mammary tumor cells

2019· article· en· W2955015018 on OpenAlexaff
Rebecca Jagroop, Roger A. Moorehead

Bibliographic record

VenueTumor Biology · 2019
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicCancer-related molecular mechanisms research
Canadian institutionsUniversity of Guelph
Fundersnot available
KeywordsClaudinComputer scienceCancer researchCell biologyBiologyTight junction

Abstract

fetched live from OpenAlex

Breast cancer is the most common type of cancer among women, with one subset of the triple-negative subtype, claudin-low, known to be very aggressive and metastatic. For invasion and metastasis to occur, cancer cells must cross basement membranes, which contain structural proteins such as laminin and collagen IV and linking proteins such as perlecan and nidogen, to colonize distant tissues. Nidogen is a glycoprotein that makes up 2-3% of basement membranes and has two types: nidogen-1 (NID1) and nidogen-2 (NID2). There have been limited studies on NID1 in cancer, with results demonstrating decreased invasiveness and metastatic capabilities in Nid1 silenced cells of various cancer types. In previous work, a murine cell line representative of the claudin-low subtype, known as RJ423, was developed; it demonstrated a 5000-fold increase in Nid1 expression compared to the luminal subtypes. To test whether high Nid1 expression contributes to the aggressive, metastatic nature of claudin-low tumors, Nid1 levels were knocked down in RJ423 cells and proliferation and migratory capabilities were assessed. Phospho-histone H3 immunofluorescence demonstrated that suppressing NID1 reduced RJ423 cell proliferation significantly. Also, proliferation was explored using flow cytometry to obtain cell cycle profiles, and it was observed that there was a reduction in the G2 phase of NID1-suppressed cells. Additionally, apoptosis was assessed through flow cytometry to determine annexin V levels, but suppression of NID1 levels did not alter apoptosis. Furthermore, invasion assays demonstrated a reduction in migration through collagen IV-coated wells using NID1-suppressed cells. Knockdown of Nid1 expression in RJ423 cells reduced the level of NID1 in conditioned media, and preliminary studies suggest that the levels of NID1 in conditioned media can influence tumor cell growth. These findings suggest that NID1 could be targeted to lessen the metastatic nature of claudin-low breast cancer.Citation Format: Rebecca Jagroop, Roger Moorehead. The effects of nidogen-1 on proliferation and migration in claudin-low mammary tumor cells [abstract]. In: Proceedings of the American Association for Cancer Research Annual Meeting 2019; 2019 Mar 29-Apr 3; Atlanta, GA. Philadelphia (PA): AACR; Cancer Res 2019;79(13 Suppl):Abstract nr 2851.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.007
Threshold uncertainty score0.418

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.004
GPT teacher head0.235
Teacher spread0.232 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

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Citations0
Published2019
Admission routes1
Has abstractyes

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