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Record W2963530303 · doi:10.1137/18m1222338

The Linear Stability of Symmetric Spike Patterns for a Bulk-Membrane Coupled Gierer--Meinhardt Model

2019· article· en· W2963530303 on OpenAlexafffund
Daniel Gomez, Michael J. Ward, Juncheng Wei

Bibliographic record

VenueSIAM Journal on Applied Dynamical Systems · 2019
Typearticle
Languageen
FieldComputer Science
TopicNonlinear Dynamics and Pattern Formation
Canadian institutionsUniversity of British Columbia Hospital
FundersNatural Sciences and Engineering Research Council of Canada
KeywordsEigenvalues and eigenvectorsReaction–diffusion systemPhysicsMathematical analysisLinear stabilityThermal diffusivityNonlinear systemMathematicsThermodynamicsQuantum mechanics

Abstract

fetched live from OpenAlex

We analyze a coupled bulk-membrane PDE model in which a scalar linear 2-D bulk diffusion process is coupled through a linear Robin boundary condition to a two-component 1-D reaction-diffusion (RD) system with Gierer--Meinhardt (nonlinear) reaction kinetics defined on the domain boundary. For this coupled model, in the singularly perturbed limit of a long-range inhibition and short-range activation for the membrane-bound species, asymptotic methods are used to analyze the existence of localized steady-state multispike membrane-bound patterns and to derive a nonlocal eigenvalue problem (NLEP) characterizing the $\mathcal{O}(1)$ time-scale instabilities of these patterns. A central, and novel, feature of this NLEP is that it involves a membrane Green's function that is coupled nonlocally to a bulk Green's function. When the domain is a disk, or in the well-mixed shadow-system limit corresponding to an infinite bulk diffusivity, this Green's function problem is analytically tractable, and as a result we will use a hybrid analytical-numerical approach to determine unstable spectra of this NLEP. This analysis characterizes how the 2-D bulk diffusion process and the bulk-membrane coupling modify the well-known linear stability properties of steady-state spike patterns for the 1-D Gierer--Meinhardt model in the absence of coupling. In particular, phase diagrams in parameter space for our coupled model characterizing either oscillatory instabilities due to Hopf bifurcations or competition instabilities due to zero-eigenvalue crossings are constructed. Finally, linear stability predictions from the NLEP analysis are confirmed with full numerical finite element simulations of the coupled PDE system. We remark that our approach is valid in more general settings than the disk or the well-mixed shadow system, with the key hurdle being the computation of the relevant Green's functions. By restricting our detailed analysis to these two specialized cases, we can bypass the computational challenges of calculating the Green's functions and therefore focus instead on the novel effects of coupling on the construction and stability of multispike solutions.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.001
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Simulation or modeling · Consensus signal: Simulation or modeling
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.005
Threshold uncertainty score0.009

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.001
Meta-epidemiology (narrow)0.0010.000
Meta-epidemiology (broad)0.0010.001
Bibliometrics0.0010.000
Science and technology studies0.0000.001
Scholarly communication0.0010.001
Open science0.0010.001
Research integrity0.0010.001
Insufficient payload (model declined to judge)0.0010.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.015
GPT teacher head0.238
Teacher spread0.223 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designSimulation or modeling
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations25
Published2019
Admission routes2
Has abstractyes

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