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Record W2968403268

Influence of PET image reconstruction and segmentation methods on target volume estimation

2019· article· en· W2968403268 on OpenAlexaff
Hanif Gabrani-Juma, Dan La Russa, Ran Klein

Bibliographic record

Venuenot available
Typearticle
Languageen
FieldMedicine
TopicMedical Imaging Techniques and Applications
Canadian institutionsOttawa Hospital
Fundersnot available
KeywordsImaging phantomThresholdingMathematicsPartial volumeIterative reconstructionSegmentationArtificial intelligenceNuclear medicinePixelVolume (thermodynamics)Computer visionComputer scienceImage (mathematics)PhysicsMedicine
DOInot available

Abstract

fetched live from OpenAlex

1203 Objectives: Position emission tomography (PET) is increasingly being used to guide radiation therapy treatment planning processes. Best possible outcomes however, hinges on accurate target volumes derived from these PET images. This work aims to establish an optimal method for deriving target volumes with PET including 1) PET image reconstruction algorithms and reconstruction parameters, and 2) image volume delineation techniques. Methods: The NEMA hot-spheres phantom (10, 13, 17, 22, 28, 37 mm sphere diameters) was imaged twice using high (HSB) and low (LSB) sphere-to-background activity concentration ratios using ~40 MBq of 18F activity in each (87:1 and 4:1 ratios achieved, respectively). Images were acquired over 2.5 min using typical image acquisition parameters on a GE Discovery 710 PET/CT. PET images were reconstructed using two vendor provided reconstruction algorithms: Ordered subset (OSEM) and Bayesian penalized likelihood (BSREM) expectation maximization. Reconstructed image matrix size was varied (1282, 1922, 2562 and 3202 pixels per slice), as was the number of iterations (NoI) - from 2 to 10 in increments of 2, the number of subsets (NoS) - from 12 and 24, and the noise penalization variable (β) in BRSEM reconstructions - from 50 to 500 in increments of 50. Sphere volume delineation was achieved using both peak intensity relative thresholding (%PT) with varying percent thresholds and using maximum gradient (MG) segmentation. PET-image derived volumes were compared to known phantom volumes to calculate percent errors. Results: ANOVA analysis indicated significant dependence of volume error on sphere size, spheres-to-background ratio, image matrix size, %PT and NoI/NoS (OSEM) (p 0.05). Small spheres were associated with the largest errors. With OSEM reconstruction, volumes defined using the %PT method had errors ranging between -98% to 809% [907%], but were optimized with small matrix size (128x128) and moderate number of iteration (e.g. 2 iteration, 24 subsets). Using this optimal reconstruction, volume errors ranged -25% to 3% [28%] for HSB data using 20%PT and -25% to 3% [28%] for LSB using 35%PT. Delineation using MG had greater errors ranging -31% to 11% [42%] and -75% to -25% [50%] for HSB and LSB scans respectively. Likewise, with BSREM, optimal reconstruction was 128x128 and little dependence on β value. Using β=350 the PT method was optimized to have errors ranging -7% to 36% [43%] for HSB data using 20%PT and -31% to -10% [21%] for LSB data using 35%PT, and MG method also had similar errors as with OSEM, -12 to 15% [27%] (HSB) and -77% to 23% [100%] (LSB). Conclusions: While optimal volume accuracy can be achieved with OSEM, reconstruction parameter optimization is required. BSREM achieves slightly lower volume accuracy, but is consistent across a large range of reconstruction parameter values. Accurate volume measurements are easily achieved with high target-to-background contrast, but are challenging in low contrast scenarios. Threshold based segmentation is highly dependent on threshold values, while automated gradient based segmentation can perform accurately with sufficient contrast. The use of anatomical imaging alongside PET may further increase volume accuracy in low contrast scenarios.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.012
metaresearch head score (Gemma)0.048
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Simulation or modeling · Consensus signal: none
GenreCandidate signal: Empirical · Consensus signal: none
Teacher disagreement score0.012
Threshold uncertainty score0.062

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0120.048
Meta-epidemiology (narrow)0.0010.001
Meta-epidemiology (broad)0.0010.001
Bibliometrics0.0010.001
Science and technology studies0.0010.001
Scholarly communication0.0020.001
Open science0.0010.001
Research integrity0.0010.001
Insufficient payload (model declined to judge)0.0010.001

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.012
GPT teacher head0.365
Teacher spread0.353 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designSimulation or modeling
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2019
Admission routes1
Has abstractyes

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