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Record W2971840542 · doi:10.1038/s41397-019-0140-y

Pharmacogenomic associations of adverse drug reactions in asthma: systematic review and research prioritisation

2020· review· en· W2971840542 on OpenAlex
Charlotte King, Amanda McKenna, Niloufar Farzan, Susanne J. H. Vijverberg, Marc P. van der Schee, Anke H. Maitland‐van der Zee, Lambang Arianto, Hans Bisgaard, Klaus Bønnelykke, Vojko Berce, Uroš Potočnik, Katja Repnik, Bruce Carleton, Denise Daley, Fook Tim Chew, Wen Chin Chiang, Yang Yie Sio, Michelle M. Cloutier, Herman T. den Dekker, Liesbeth Duijts, Johan C. de Jongste, F. Nicole Dijk, Carlos Flores, Natalia Hernandez‐Pacheco, Somnath Mukhopadhyay, Kaninika Basu, Kelan G. Tantisira, Katia Verhamme, Juan C. Celedón, Erick Forno, Glorisa Canino, Ben Francis, Munir Pirmohamed, Ian Sinha, Daniel B. Hawcutt

Why this work is in the frame

A frame that forgets how it found something cannot be audited. These are the routes that admitted this work.

affAt least one author lists a Canadian institution in the pinned OpenAlex snapshot.

Bibliographic record

VenueThe Pharmacogenomics Journal · 2020
Typereview
Languageen
FieldMedicine
TopicAsthma and respiratory diseases
Canadian institutionsBC Children's HospitalUniversity of British Columbia
FundersMinistrstvo za Izobraževanje, Znanost in ŠportNational Institute for Health and Care Research
KeywordsPharmacogenomicsAsthmaMedicineDrugAdverse effectIntensive care medicineDrug reactionPharmacologyInternal medicine

Abstract

fetched live from OpenAlex

A systematic review of pharmacogenomic studies capturing adverse drug reactions (ADRs) related to asthma medications was undertaken, and a survey of Pharmacogenomics in Childhood Asthma (PiCA) consortia members was conducted. Studies were eligible if genetic polymorphisms were compared with suspected ADR(s) in a patient with asthma, as either a primary or secondary outcome. Five studies met the inclusion criteria. The ADRs and polymorphisms identified were change in lung function tests (rs1042713), adrenal suppression (rs591118), and decreased bone mineral density (rs6461639) and accretion (rs9896933, rs2074439). Two of these polymorphisms were replicated within the paper, but none had external replication. Priorities from PiCA consortia members (representing 15 institution in eight countries) for future studies were tachycardia (SABA/LABA), adrenal suppression/crisis and growth suppression (corticosteroids), sleep/behaviour disturbances (leukotriene receptor antagonists), and nausea and vomiting (theophylline). Future pharmacogenomic studies in asthma should collect relevant ADR data as well as markers of efficacy.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.004
metaresearch head score (Gemma)0.001
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Systematic review · Consensus signal: none
GenreCandidate signal: Review · Consensus signal: Review
Teacher disagreement score0.649
Threshold uncertainty score0.896

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0040.001
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0020.001
Bibliometrics0.0000.001
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.002
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.109
GPT teacher head0.443
Teacher spread0.333 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it