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Record W2972551965 · doi:10.1111/jbg.12440

Competition model for international comparisons of livestock

2019· article· en· W2972551965 on OpenAlexaff
Larry R Schaeffer

Bibliographic record

VenueJournal of Animal Breeding and Genetics · 2019
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicGenetic and phenotypic traits in livestock
Canadian institutionsUniversity of Guelph
Fundersnot available
KeywordsSireCompetition (biology)Pairwise comparisonLivestockRanking (information retrieval)EconometricsEconomicsBiologyComputer scienceStatisticsEcologyMathematicsAnimal science

Abstract

fetched live from OpenAlex

Interbull has been responsible for comparing dairy bulls across countries since the mid-1980s. The current methodology is called MACE (multiple across country evaluations) which has been in use since 1995. Now that genomic data are being utilized in many countries, this has led to two serious problems. The first is that of preselection of young bulls such that the young animals are no longer a random sample of progeny from a sire by dam mating pair. Secondly, some countries are becoming less willing to share genomic data with Interbull. Both issues raise concern over the future of Interbull and international comparisons. This paper suggests a competition model as a potential replacement for MACE. The competition model makes pairwise comparisons between all pairs of bulls within a country and combines these differences across countries through bulls that are used in more than one country. Pedigree information is ignored as are all genomic data because bulls are treated as fixed. The model produces one international ranking of bulls averaging out any genotype by environment interactions which may exist. The competition model is illustrated by a small example. The limitations and advantages of the competition model are discussed.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.017
metaresearch head score (Gemma)0.022
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Simulation or modeling · Consensus signal: none
GenreCandidate signal: Empirical · Consensus signal: none
Teacher disagreement score0.034
Threshold uncertainty score0.113

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0170.022
Meta-epidemiology (narrow)0.0010.000
Meta-epidemiology (broad)0.0020.002
Bibliometrics0.0020.002
Science and technology studies0.0010.002
Scholarly communication0.0020.005
Open science0.0040.002
Research integrity0.0020.003
Insufficient payload (model declined to judge)0.0340.004

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.025
GPT teacher head0.273
Teacher spread0.248 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designSimulation or modeling
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2019
Admission routes1
Has abstractyes

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