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Record W2973878336

Abstract #3129: Vascular endothelial growth factor receptor 1 expressing tumor side-population cells are involved in the formation of \#8220;tumor initiating niche\#8221; in vivo

2009· article· en· W2973878336 on OpenAlexaff
Bikul Das, Rika Tsuchida, Shamim Lotfi, Micky Tsui, Sylvain Baruchel, David Malkin, Herman Yeger

Bibliographic record

VenueCancer Research · 2009
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicCancer, Hypoxia, and Metabolism
Canadian institutionsHospital for Sick Children
Fundersnot available
KeywordsMatrigelHomeobox protein NANOGPopulationBiologyStromal cellStem cellAngiogenesisCell biologyCancer researchChemistryEmbryonic stem cellMedicineInduced pluripotent stem cell
DOInot available

Abstract

fetched live from OpenAlex

Recently, we isolated a small fraction of migratory and hypoxia resistant side-population cells [SPm(hox)] from several solid tumors and demonstrated their in vivo localization in the hypoxic niche (1). These SPm (hox) cells are highly tumorigenic and express embryonic stem cell signature genes Oct 4 and Nanog, whereas non-migratory SP cells and non-SP cells are poorly tumorigenic and do not express Oct4/Nanog (1). The SPm (hox) fraction expressed a higher level of VEGFR1 (VEGF receptor, Flt1) compared to the non-SP fraction (2). Treatment with neutralizing anti-VEGF antibody rapidly converted SP to non-SP cells in vitro (3). Therefore, we hypothesized that VEGFR1 expressing SPm(hox) cells may initiate the formation of a \#8220;tumor initiation niche\#8221; in vivo. The \#8220;niche\#8221; may secrete a high level of VEGF to maintain the \#8220;stemness\#8221; state of the SPm(hox) cells. To investigate this possibility, SPm(hox) cells were isolated from SK-N-BE2 (neuroblastoma) and RH-4 (rhabdomyosarcoma) cell lines as described (1), mixed with matrigel and injected subcutaneously into Balb/c nude mice (50000 cells/plug; 8 mice). Ten days after the injection, matrigel plugs were studied for the microenvironmental changes including stromal cell infiltration, vessel cooption, angiogenesis, secretion of growth factors, and hypoxia/oxidative stress microenvironment as described (4). The SPm (hox) plug showed rapid proliferation of tumor cells, vessel cooption and marked infiltration of stromal cells within ten days of injection as compared to non-migratory SP cells (P Citation Information: In: Proc Am Assoc Cancer Res; 2009 Apr 18-22; Denver, CO. Philadelphia (PA): AACR; 2009. Abstract nr 3129.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.005
Threshold uncertainty score0.016

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.001
Insufficient payload (model declined to judge)0.0050.002

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.047
GPT teacher head0.334
Teacher spread0.287 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2009
Admission routes1
Has abstractyes

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