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Record W2979817844 · doi:10.1080/07060661.2019.1679261

Analysis of physiological races and genetic diversity of <i>Setosphaeria turcica</i> (Luttr.) K.J. Leonard &amp; Suggs from different regions of China

2019· article· en· W2979817844 on OpenAlexvenueno aff
Zhoujie Ma, Bo Liu, Shidao He, Zenggui Gao

Bibliographic record

VenueCanadian Journal of Plant Pathology · 2019
Typearticle
Languageen
FieldAgricultural and Biological Sciences
TopicPlant Disease Resistance and Genetics
Canadian institutionsnot available
Fundersnot available
KeywordsBiologyGenetic diversityPopulationGenetic variationChinaVeterinary medicineRace (biology)Genetic similarityGeneticsBotanyGeneDemographyGeography

Abstract

fetched live from OpenAlex

Setosphaeria turcica causes Northern corn leaf blight (NCLB). In this study, 92 isolates of S. turcica were collected from naturally infected corn fields at 57 sites within China to determine physiological race composition and genetic diversity. Based on the reaction of differential hosts, isolates were divided into 14 physiological races (0, 1, 2, 12, 3, 13, 23, N, 1N, 2N, 3N, 13N, 23N, 123N). Races 0 and 1 were dominant, found with frequencies of 34.78% and 28.26%, respectively. This study was the first to identify race 123N in Heilongjiang province, implying possible loss of corn variety resistance to the NCLB pathogen. A total of 64 loci were obtained from eight pairs of primers by sequence-related amplified polymorphism (SRAP), of which 44 were polymorphic, accounting for 68.75% of the loci. Molecular markers showed that 92 isolates could be categorized into four groups with a similarity coefficient of 0.82, indicating abundant genetic diversity. Further analysis of genetic similarity and genetic distance of each geographical population revealed that the populations from Northeast, North, and Northwest China exhibited high similarities to each other, while exhibiting a large genetic distance with those from Southwest China. Analysis of molecular variance indicated that 81.54% of the genetic variation among isolates was derived from individuals within the geographical population (P < 0.001). The cluster analyses suggested that there was no distinct correlation among physiological races, genetic variation and geographic sources. This study provides a basis for understanding trends in S. turcica distribution and control of NCLB in China.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: none
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.005
Threshold uncertainty score0.009

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0010.001
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.015
GPT teacher head0.187
Teacher spread0.172 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations19
Published2019
Admission routes1
Has abstractyes

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