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Record W2979860221 · doi:10.1021/acs.jproteome.9b00542

Human Proteome Project Mass Spectrometry Data Interpretation Guidelines 3.0

2019· article· en· W2979860221 on OpenAlexafffund
Eric W. Deutsch, Lydie Lane, Christopher M. Overall, Nuno Bandeira, Mark S. Baker, Charles Pineau, Robert L. Moritz, Fernando J. Corrales, Sandra Orchard, Jennifer E. Van Eyk, Young‐Ki Paik, Susan T. Weintraub, Yves Vandenbrouck, Gilbert S. Omenn

Bibliographic record

VenueJournal of Proteome Research · 2019
Typearticle
Languageen
FieldChemistry
TopicAdvanced Proteomics Techniques and Applications
Canadian institutionsUniversity of British Columbia
FundersDivision of Integrative Organismal SystemsU.S. National Library of MedicineNational Institute of Biomedical Imaging and BioengineeringNational Institute of Environmental Health SciencesNational Institute of Diabetes and Digestive and Kidney DiseasesNational Institute of Allergy and Infectious DiseasesNational Institute on AgingNational Eye InstituteAgence Nationale de la RechercheNational Human Genome Research InstituteDivision of Biological InfrastructureNational Institute of General Medical SciencesNational Institute of Mental HealthNational Heart, Lung, and Blood InstituteNational Science FoundationCanadian Institutes of Health ResearchMinistry of Health and WelfareNational Cancer Institute
KeywordsHuman proteome projectProteomeWorkflowPipeline (software)IdentifierComputer scienceUniProtData scienceComputational biologyProteomicsBioinformaticsBiologyDatabaseGenetics

Abstract

fetched live from OpenAlex

OpenAlex records an abstract for this work, but it could not be fetched just now.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.051
metaresearch head score (Gemma)0.078
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesMetaresearch
Consensus categoriesnone
DomainCandidate signal: Methods · Consensus signal: none
Study designCandidate signal: Not applicable · Consensus signal: Not applicable
GenreCandidate signal: Methods · Consensus signal: Methods
Teacher disagreement score0.949
Threshold uncertainty score0.269

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0510.078
Meta-epidemiology (narrow)0.0020.002
Meta-epidemiology (broad)0.0020.003
Bibliometrics0.0090.007
Science and technology studies0.0030.002
Scholarly communication0.0070.004
Open science0.0080.005
Research integrity0.0040.007
Insufficient payload (model declined to judge)0.0250.033

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.190
GPT teacher head0.498
Teacher spread0.308 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

Study designNot applicable
DomainMethods
GenreMethods

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations128
Published2019
Admission routes2
Has abstractyes

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