MétaCan
Menu
Back to cohort
Record W2981657577 · doi:10.1242/jeb.211243

Naked mole rats reduce the expression of ATP-dependent but not ATP-independent heat shock proteins in acute hypoxia

2019· article· en· W2981657577 on OpenAlexafffund
Vu Chau Nguyen, Courtney A. Deck, Matthew E. Pamenter

Bibliographic record

VenueJournal of Experimental Biology · 2019
Typearticle
Languageen
FieldEnvironmental Science
TopicPhysiological and biochemical adaptations
Canadian institutionsUniversity of Ottawa
FundersNatural Sciences and Engineering Research Council of CanadaCanada Research Chairs
KeywordsHypoxia (environmental)Heat shock proteinHsp27Hsp70BiologyHsp90Gene expressionCell biologyWestern blotChaperone (clinical)Internal medicineEndocrinologyGeneOxygenBiochemistryChemistryMedicinePathology

Abstract

fetched live from OpenAlex

Naked mole rats (NMRs) are one of the most hypoxia-tolerant mammals identified and putatively experience intermittent and severe hypoxia in their underground burrows. Systemic physiological adaptions to hypoxia have begun to be investigated in this species; however, the cellular adaptations that underlie this tolerance remain poorly understood. Hypoxia compromises cellular energy production; and the maintenance of protein integrity when ATP generation is limited poses a major challenge. Heat shock proteins (HSPs) are cellular chaperones that are cytoprotective during hypoxia and we hypothesized that their expression would increase during acute hypoxia in NMRs. To test this hypothesis, we used qPCR and Western blot approaches to measure changes in gene and protein expression, respectively, of HSP27, HSP40, HSP70, and HSP90 in the brain, heart, liver, and temporalis muscle from NMRs following exposure to normoxia (21% O2) or hypoxia (7% O2 for 4, 12, or 24 hrs). Contrary to our expectations, we observed significant global reductions of ATP-dependant HSP70 and HSP90 (83% and 78%, respectively) after 24 hrs of hypoxia. Conversely, the expression of ATP-independent HSP27 and HSP40 proteins remained constant throughout the 24-hr hypoxic treatment in brain, heart and muscle. However, with prolonged hypoxia (24 hrs), the expression of HSP27 and HSP40 genes in these tissues was also reduced, suggesting that the protein expression of these chaperones may also eventually decrease in hypoxia. These results suggest that energy conservation is prioritized over cytoprotective protein chaperoning in NMR tissues during acute hypoxia. This unique adaptation may help NMRs to minimize energy expenditure while still maintaining proteostasis in hypoxia.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.002
Threshold uncertainty score0.008

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0010.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0010.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.001
Insufficient payload (model declined to judge)0.0020.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.019
GPT teacher head0.270
Teacher spread0.251 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations18
Published2019
Admission routes2
Has abstractyes

Explore more

Same venueJournal of Experimental BiologySame topicPhysiological and biochemical adaptationsFrench-language works237,207