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Record W2982242456 · doi:10.1093/cdn/nzz044.p08-063-19

Serine and Glycine Are Essential for Human Muscle Progenitor Cell P Roliferation (P08-063-19)

2019· article· en· W2982242456 on OpenAlexaboutno aff
Brandon Gheller, Jamie Blum, Anna Thalacker‐Mercer

Bibliographic record

VenueCurrent Developments in Nutrition · 2019
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicVirus-based gene therapy research
Canadian institutionsnot available
Fundersnot available
KeywordsProgenitor cellSerineGlycineProgenitorCell biologyChemistryComputational biologyBiochemistryBiologyStem cellAmino acidPhosphorylation

Abstract

fetched live from OpenAlex

OBJECTIVES: After damage, skeletal muscle (SkM) regeneration is reliant on SkM-specific stem cells (muscle progenitor cells [MPCs]), which are activated from quiescence and rapidly proliferate until an adequate number of cells to support regeneration are available. The regenerative process is impaired with advancing age. An emerging requirement for rapidly proliferating cells (e.g., cancer cells, activated T cells) are the non-essential amino acids serine (Ser) and glycine (Gly). We have shown that Ser and Gly within the SkM decline with aging (r(2) = −0.376, P < 0.004, n = 62). Objective: To determine the requirement of Ser and Gly for human MPC (hMPC) proliferation. METHODS: From vastus lateralis biopsy tissue of female donors (n = 5) hMPCs (CD29(+)/CD56(+)) were isolated via FACS. hMPCs were cultured in a formulated growth media with 10% dialyzed and charcoal treated fetal bovine serum to control Ser and Gly concentrations. RESULTS: hMPCs cultured without Ser/Gly did not increase cell number. Addition of Ser/Gly rescued cell number in a dose-dependent manner (P < 0.01). RNA-sequencing (RNAseq) identified up-regulation of genes related to NRF2 signaling (oxidative stress response), Ser/Gly biosynthesis, amino acid transport, and gluconeogenic genes and down-regulation of glutathione metabolism and collagen synthesis genes with Ser/Gly restriction. Supporting our RNAseq data, Ser/Gly restriction increased reactive oxygen species, as measured by flow cytometry (>70%, P = 0.1), reduced total glutathione levels (P < 0.01) as well as the reduced: oxidized glutathione ratio (P < 0.01). However, exogenous glutathione provided a modest rescue in cell number (P < 0.05) while pyruvate, a gluconeogenic precursor with antioxidant properties, fully rescued cell number (P < 0.01). With Ser/Gly depletion, we also observed an increase in ATF4 (P < 0.01), a stress-responsive transcription factor downstream of NRF2 and an upregulation of ATF4 target genes. CONCLUSIONS: Ser and Gly restriction in hMPCs leads to an increased oxidative state, which likely underlies increased NRF2/ATF4 activity and loss of proliferation. This research underscores the essentiality of Ser and Gly for human MPC proliferation and therefore, the SkM regenerative process. FUNDING SOURCES: Canadian Institutes of Health Research Doctoral Foreign Study Award to BG.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.004
Threshold uncertainty score0.014

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0040.002

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.020
GPT teacher head0.323
Teacher spread0.303 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations4
Published2019
Admission routes1
Has abstractyes

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