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Record W2983727063 · doi:10.1371/journal.pone.0224307

Clustering via hypergraph modularity

2019· article· en· W2983727063 on OpenAlexafffund
Bogumił Kamiński, Valérie Poulin, Paweł Prałat, Przemysław Szufel, François Théberge

Bibliographic record

VenuePLoS ONE · 2019
Typearticle
Languageen
FieldPhysics and Astronomy
TopicComplex Network Analysis Techniques
Canadian institutionsToronto Metropolitan University
FundersNatural Sciences and Engineering Research Council of CanadaNarodowa Agencja Wymiany Akademickiej
KeywordsHypergraphModularity (biology)Cluster analysisComputer scienceTheoretical computer scienceClustering coefficientHeuristicFunction (biology)Simple (philosophy)GraphGraph theoryAlgorithmMathematicsCombinatoricsArtificial intelligence

Abstract

fetched live from OpenAlex

Despite the fact that many important problems (including clustering) can be described using hypergraphs, theoretical foundations as well as practical algorithms using hypergraphs are not well developed yet.In this paper, we propose a hypergraph modularity function that generalizes its well established and widely used graph counterpart measure of how clustered a network is.In order to define it properly, we generalize the Chung-Lu model for graphs to hypergraphs.We then provide the theoretical foundations to search for an optimal solution with respect to our hypergraph modularity function.A simple heuristic algorithm is described and applied to a few illustrative examples.We show that using a strict version of our proposed modularity function often leads to a solution where a smaller number of hyperedges get cut as compared to optimizing modularity of 2-section graph of a hypergraph. IntroductionAn important property of complex networks is their community structure, that is, the organization of vertices in clusters, with many edges joining vertices of the same cluster and comparatively few edges joining vertices of different clusters [1,2].In social networks, communities may represent groups by interest (practical application include collaborative tagging-[3]), in citation networks they correspond to related papers (see [4]), similarly in the web communities are formed by pages on related topics.Yet another example could be financial markets where we have several groups of financial instruments that might be correlated with each other in several different groups.Such groups can be represented as hyperedges and hence detection of communities in such hypergraph could lead to better understanding of dependencies between financial instruments.Hypergraphs can also be used to model transportation systems.For example in [5] the authors consider transportation system represented as a directed hypergraph.A hyperedge can represent a situation where a single stop (starting or destination point) is being serviced by several public transportation lines and vehicle types that can be differently chosen by an agent traveling within the transportation grid and communities can represent paths taken often together.Another application was presented in [6]-the authors suggest using hypergraphs to model interactions between biological cells in computational biology.Finally,in [7] one can find a discussion on how hypergraphs can be used for modeling telecommunication systems

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.002
metaresearch head score (Gemma)0.006
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Theoretical or conceptual · Consensus signal: Theoretical or conceptual
GenreCandidate signal: Empirical · Consensus signal: none
Teacher disagreement score0.004
Threshold uncertainty score0.014

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0020.006
Meta-epidemiology (narrow)0.0010.001
Meta-epidemiology (broad)0.0010.001
Bibliometrics0.0040.002
Science and technology studies0.0010.002
Scholarly communication0.0020.004
Open science0.0010.002
Research integrity0.0010.001
Insufficient payload (model declined to judge)0.0020.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.022
GPT teacher head0.215
Teacher spread0.193 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designTheoretical or conceptual
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations81
Published2019
Admission routes2
Has abstractyes

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