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Record W2988132553 · doi:10.7554/elife.47788

A single clonal lineage of transmissible cancer identified in two marine mussel species in South America and Europe

2019· article· en· W2988132553 on OpenAlexaffabout
Marisa A. Yonemitsu, Rachael M. Giersch, Maria Polo-Prieto, M. Hammel, Alexis Simon, Florencia Cremonte, Fernando T Avilés, Nicolás Merino-Véliz, E. A. V. Burioli, Annette F. Muttray, James P. Sherry, Carol L. Reinisch, Susan A. Baldwin, Stephen P. Goff, Maryline Houssin, Gloria Arriagada, Nuria Vázquez, Michael J. Metzger

Bibliographic record

VenueeLife · 2019
Typearticle
Languageen
FieldEnvironmental Science
TopicMarine Bivalve and Aquaculture Studies
Canadian institutionsUniversity of British ColumbiaEnvironment and Climate Change Canada
FundersCentro de Estudos Ambientais e Marinhos, Universidade de AveiroMontpellier Université d'ExcellenceNational Cancer InstituteNational Institutes of HealthMinisterio de Economía y CompetitividadFundação para a Ciência e a TecnologiaConsejo Nacional de Investigaciones Científicas y TécnicasFondo Nacional de Desarrollo Científico y TecnológicoHoward Hughes Medical InstituteAgence Nationale de la RechercheXunta de GaliciaEuropean Commission
KeywordsBiologyLineage (genetic)Phylogenetic treeCancerMytilusZoologyEvolutionary biologyGeneticsEcologyGene

Abstract

fetched live from OpenAlex

Transmissible cancers, in which cancer cells themselves act as an infectious agent, have been identified in Tasmanian devils, dogs, and four bivalves. We investigated a disseminated neoplasia affecting geographically distant populations of two species of mussels (Mytilus chilensis in South America and M. edulis in Europe). Sequencing alleles from four loci (two nuclear and two mitochondrial) provided evidence of transmissible cancer in both species. Phylogenetic analysis of cancer-associated alleles and analysis of diagnostic SNPs showed that cancers in both species likely arose in a third species of mussel (M. trossulus), but these cancer cells are independent from the previously identified transmissible cancer in M. trossulus from Canada. Unexpectedly, cancers from M. chilensis and M. edulis are nearly identical, showing that the same cancer lineage affects both. Thus, a single transmissible cancer lineage has crossed into two new host species and has been transferred across the Atlantic and Pacific Oceans and between the Northern and Southern hemispheres.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesInsufficient payload (model declined to judge)
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: Observational
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.032
Threshold uncertainty score0.999

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0020.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.014
GPT teacher head0.252
Teacher spread0.238 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations93
Published2019
Admission routes2
Has abstractyes

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