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Record W2988980607 · doi:10.7554/elife.10757.022

Author response: Local mechanical forces promote polarized junctional assembly and axis elongation in Drosophila

2015· peer-review· en· W2988980607 on OpenAlexaff
Jessica Yu, Rodrigo Fernández‐González

Bibliographic record

Venuenot available
Typepeer-review
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicCellular Mechanics and Interactions
Canadian institutionsHospital for Sick ChildrenUniversity of Toronto
Fundersnot available
KeywordsElongationDirectionalityVertex (graph theory)PerpendicularTension (geology)Apical constrictionBiophysicsPhysicsAnatomyChemistryComputer scienceBiologyMorphogenesisGeometryCombinatoricsMaterials scienceMathematicsGenetics

Abstract

fetched live from OpenAlex

Tissues and organs form certain shapes that allow them to perform particular roles in the body. For example, the lungs form sacs that accommodate large volumes of air, while the skin forms a sheet to cover and protect our internal organs. One way to shape a tissue is for cells to swap places with their neighbours. During this rearrangement, the contacts between neighbouring cells break down before new contacts are formed with other cells. While the physical and molecular signals that guide the break down of cell contacts are well understood, less is known about how new contacts form. Early in development, animal embryos establish a head-to-tail 'axis' that helps to guide where each tissue and organ will form in the body. In fruit fly embryos, the cell rearrangements that drive this process involve cells exchanging places with their neighbours by gathering around a single point. These temporary cell clusters are then organised via new cell contacts that form parallel to the head-to-tail axis. Here, Yu and Fernandez-Gonzalez investigate the role of mechanical forces in forming new cell contacts as the head-tail axis elongates. The experiments show that disrupting the ability of the cells to generate mechanical forces inhibited the formation of new cell contacts and prevented cells from successfully swapping places. Conversely, when mechanical tension is applied at the rearrangement site, the assembly of new cell contacts happens faster. Furthermore, if the tension is applied in different orientations, new cell contacts form parallel to the direction of the mechanical force. Yu and Fernandez-Gonzalez thus show that local mechanical forces direct the assembly of new cell contacts as the head-to-tail axis forms. These forces are most likely generated by cell contractions that appear to create mechanical tension at sites of cell rearrangement. How such physical forces are converted into molecular signals remains a question for future work.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.001
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Not applicable · Consensus signal: none
GenreCandidate signal: Commentary · Consensus signal: none
Teacher disagreement score0.087
Threshold uncertainty score0.291

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.001
Meta-epidemiology (narrow)0.0010.000
Meta-epidemiology (broad)0.0010.001
Bibliometrics0.0000.000
Science and technology studies0.0010.000
Scholarly communication0.0010.000
Open science0.0010.001
Research integrity0.0020.001
Insufficient payload (model declined to judge)0.0870.023

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.030
GPT teacher head0.323
Teacher spread0.293 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designNot applicable
Domainnot available
GenreCommentary

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2015
Admission routes1
Has abstractyes

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