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The Ecobiomics project: Advancing metagenomics assessment of soil health and freshwater quality in Canada

2019· article· en· W2992668234 on OpenAlexafffundabout
Thomas A. Edge, Donald J. Baird, Guillaume J. Bilodeau, Nellie Gagné, Charles W. Greer, David Konkin, Glen Newton, Armand Séguin, Lee A. Beaudette, Satpal Bilkhu, Alex Bush, Wen Chen, Jérôme Comte, Janet Condie, Sophie Crévecoeur, Nazir El-Kayssi, Erik J. S. Emilson, Donna-Lee Fancy, Iyad Kandalaft, Izhar U. H. Khan, Ian W. King, David P. Kreutzweiser, David R. Lapen, John R. Lawrence, Christine Lowe, Oliver Lung, Christine Martineau, Matthew J. Meier, Nicholas H. Ogden, David Paré, Lori A. Phillips, Teresita M. Porter, Joel L. Sachs, Zachery R. Staley, Royce Steeves, Lisa Venier, Teodor Veres, L. Cynthia Watson, Susan B. Watson, James Macklin

Bibliographic record

VenueThe Science of The Total Environment · 2019
Typearticle
Languageen
FieldEnvironmental Science
TopicEnvironmental DNA in Biodiversity Studies
Canadian institutionsOntario Forest Research InstitutePublic Health Agency of CanadaInstitut National de la Recherche ScientifiqueAgriculture and Agri-Food CanadaNatural Resources CanadaSaskatchewan Research Council (Canada)National Research Council CanadaEnvironment and Climate Change CanadaFisheries and Oceans CanadaCanadian Food Inspection AgencyUniversity of New Brunswick
FundersEnvironment and Climate Change CanadaAgriculture and Agri-Food CanadaGovernment of Canada
KeywordsMetagenomicsMicrobiomeBiodiversityWater qualityInvertebrateCitizen scienceEcologyBiologyEnvironmental resource managementEnvironmental scienceBioinformatics

Abstract

fetched live from OpenAlex
No abstract in any covered source. Its absence is recorded, not treated as a negative.

No abstract. This is not a gap in this database; OpenAlex has none either. 23.3% of the frame is in this state, and the screen finds HALF as much metaresearch here, so the absence is a measured bias rather than a missing field.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.002
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: Observational
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.287
Threshold uncertainty score0.870

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0020.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.002
Scholarly communication0.0000.000
Open science0.0010.002
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.011
GPT teacher head0.236
Teacher spread0.224 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations36
Published2019
Admission routes3
Has abstractno

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