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Record W2992992999 · doi:10.1093/jas/skz258.153

85 DNA parentage in multi-sire breeding groups and sire repeatability on replacement heifer performance

2019· article· en· W2992992999 on OpenAlexaffabout
Tess D Mills, Kathy Larson, Mika Asai-Coakwell, Diego Moya Fernandez, John Campbell, Bart Lardner

Bibliographic record

VenueJournal of Animal Science · 2019
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicGenetic and phenotypic traits in livestock
Canadian institutionsUniversity of Saskatchewan
Fundersnot available
KeywordsSireBreedBiologyIce calvingAnimal scienceHerdWeaningProgeny testingCow-calfRepeatabilityVeterinary medicineSelection (genetic algorithm)LactationMathematicsPregnancyStatisticsMedicineGenetics

Abstract

fetched live from OpenAlex

Abstract The objective of this study was to apply DNA parentage testing in multi-sire breeding groups to assess repeatability of a sire’s impact on replacement females and terminal animals. Parentage testing was performed on DNA from 37 bulls and 1578 calves from a commercial ranch using natural breeding in four multi-sire breeding pastures over a four-year period (2015–2018). Parentage data was analyzed using Chi-square procedures. In 2016 and 2018, all bulls in the four breeding groups sired significantly different (P < 0.01) numbers of calves than expected. In 2015 and 2017, bulls in 2 of 4 and 3 of 4 breeding groups, respectively, sired significantly different (P < 0.01) numbers of calves than expected. For the 2015 and 2016 calf crops, three of 24 bulls used sired 30% of the calves and 33% of the selected replacement heifers. In 2017 and 2018, the calves born to the daughters of these three most prolific sires, averaged 4.5kg lower weaning weights than the average wean weights of the remaining calves. In 2018, all calves were tested for breed composition and vigour score using the EnvigourHX test from Neogen (Neogen Canada Inc., Edmonton Alberta, Canada). The average herd vigour score was 70%; the average vigour score for 2018 calves born to daughters of the top three prolific sires was 56%. Coupling production measures (weaning weights, birth dates, calving intervals) with sire parentage and vigour score data provides beef cattle producers with additional information to guide breeding choices to improve production in their operations.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.003
metaresearch head score (Gemma)0.005
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: Observational
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.003
Threshold uncertainty score0.015

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0030.005
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0010.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0010.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.020
GPT teacher head0.270
Teacher spread0.250 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2019
Admission routes2
Has abstractyes

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