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Record W2994352004

CONTRACTILE PROTEIN NUMBER IN ADJACENT SARCOMERES – IS THERE A DIFFERENCE?

2014· article· en· W2994352004 on OpenAlexvenueno aff
Hilda Antwi-Nsiah, Ruth A. Seerattan, Walter Herzog

Bibliographic record

VenueJournal of undergraduate research in Alberta · 2014
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicMuscle Physiology and Disorders
Canadian institutionsnot available
Fundersnot available
KeywordsSarcomereMyofibrilMyosinMyofilamentAnatomyChemistryTitinBiophysicsBiologyMyocyteBiochemistryCell biology
DOInot available

Abstract

fetched live from OpenAlex

INTRODUCTION Variation in sarcomere length within an actively contracting skeletal muscle has often been observed yet remains unexplained. Sarcomeres within a myofibril are connected in series and thus they must each produce the same amount of force [1]. We know that the amount of force that a sarcomere can produce is related to the amount of overlap between the actin and myosin filaments within it. As a result, sarcomere length affects the amount of force that a sarcomere can produce [2]. If we assume that sarcomeres within a myofibril contain the same number of contractile proteins, it would be expected that sarcomeres within a myofibril would be of the same or similar length thus producing the same amount of force. However, it has been observed that sarcomere lengths vary within myofibrils [3] causing us to hypothesize that contractile protein number differs between adjacent sarcomeres. The purpose of this study was to identify the number of myosin filaments in serially arranged sarcomeres and determine if this number differed. The hope was to provide a possible explanation for the difference in serially arranged sarcomere lengths within myofibrils. METHODS Bundles of rabbit psoas muscle fibers about 2 mm in diameter were harvested and placed in a modified Karnovsky’s fixative. The fibers were post fixed with 1% osmium tetroxide and then put through a standard dehydration and infiltration process. The muscle samples were teased apart under a dissecting scope to get bundles about 100 μm in diameter and embedded in Embed 812 Resin. Blocks were cut into 100 nm thick slices perpendicularly to the embedded samples to obtain cross sections of the muscle samples. Sectioning was done using an ultracut microtome. The sections were stained with uranyl acetate and lead citrate and viewed under an electron microscope to obtain images of myofibril cross sections. The number of myosin filaments present was then counted manually. RESULTS An electron micrograph of a sarcomere cross section was obtained and is shown in Figure 1. The number of myosin filaments counted was 715 in this sarcomere of approximate cross sectional area 0.7 μm 2 . LIMITATIONS Due to the size of our samples (about 100 μm in diameter) compared to the size of a single myofibril (about 1 μm in diameter) we were not able to follow a single myofibril in multiple micrographs and compare the number of myosin filaments in adjacent sarcomeres. DISCUSSION AND CONCLUSIONS In this study we were successful in obtaining an electron micrograph of a sarcomere in cross section and counting the number of myosin filaments within it. We anticipate that when we are successful in counting the number of myosin filaments in adjacent sarcomeres, we will find a difference, thus providing a possible explanation for the variance in sarcomere length within a myofibril. From this investigation we have identified a viable method for imaging sarcomeres in cross section and counting the number of myosin filaments within them. The next step is to refine the protocol in order to embed smaller samples. With smaller samples it will be easier to locate and track a single myofibril in multiple electron micrographs and compare the number of myosin filaments in adjacent sarcomeres.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.001
metaresearch head score (Gemma)0.001
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: none
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.002
Threshold uncertainty score0.008

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0010.001
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0010.001
Science and technology studies0.0000.001
Scholarly communication0.0010.001
Open science0.0010.000
Research integrity0.0010.000
Insufficient payload (model declined to judge)0.0020.001

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.029
GPT teacher head0.340
Teacher spread0.311 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

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Citations0
Published2014
Admission routes1
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Same venueJournal of undergraduate research in AlbertaSame topicMuscle Physiology and DisordersFrench-language works237,207