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Record W2994777570 · doi:10.7554/elife.52153

Retinal oxygen supply shaped the functional evolution of the vertebrate eye

2019· article· en· W2994777570 on OpenAlexaff
Christian Damsgaard, Henrik Lauridsen, Anette MD Funder, Jesper Skovhus Thomsen, Thomas Desvignes, Dane A. Crossley, Peter Rask Møller, Do TT Huong, Nguyễn Thành Phương, H. William Detrich, Annemarie Brüel, Horst Wilkens, Eric J. Warrant, Tobias Wang, Jens Randel Nyengaard, Michael Berenbrink, Mark Bayley

Bibliographic record

VenueeLife · 2019
Typearticle
Languageen
FieldEnvironmental Science
TopicFish biology, ecology, and behavior
Canadian institutionsUniversity of British Columbia
FundersOffice of Polar ProgramsBiotechnology and Biological Sciences Research CouncilKaren Elise Jensens FondVelux FondenVillum FondenDanish International Development AgencyUdenrigsministerietNational Science FoundationDanmarks Frie ForskningsfondDanida Fellowship CentreCarlsbergfondetDirectorate for Biological Sciences
KeywordsRetinalRetinaBiologyVertebrateOxygen evolutionAnatomyEvolutionary biologyNeuroscienceGeneticsChemistryGeneBiochemistry

Abstract

fetched live from OpenAlex

The retina has a very high energy demand but lacks an internal blood supply in most vertebrates. Here we explore the hypothesis that oxygen diffusion limited the evolution of retinal morphology by reconstructing the evolution of retinal thickness and the various mechanisms for retinal oxygen supply, including capillarization and acid-induced haemoglobin oxygen unloading. We show that a common ancestor of bony fishes likely had a thin retina without additional retinal oxygen supply mechanisms and that three different types of retinal capillaries were gained and lost independently multiple times during the radiation of vertebrates, and that these were invariably associated with parallel changes in retinal thickness. Since retinal thickness confers multiple advantages to vision, we propose that insufficient retinal oxygen supply constrained the functional evolution of the eye in early vertebrates, and that recurrent origins of additional retinal oxygen supply mechanisms facilitated the phenotypic evolution of improved functional eye morphology.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesInsufficient payload (model declined to judge)
Consensus categoriesInsufficient payload (model declined to judge)
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: Observational
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.084
Threshold uncertainty score0.999

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0070.002

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.010
GPT teacher head0.212
Teacher spread0.202 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; both teacher heads agree on what is shown here.

Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations27
Published2019
Admission routes1
Has abstractyes

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