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Record W2996299630 · doi:10.1080/23802359.2019.1693921

The complete mitochondrial genome of the brown pansy butterfly, <i>Junonia stygia</i> (Aurivillius, 1894), (Insecta: Lepidoptera: Nymphalidae)

2019· article· en· W2996299630 on OpenAlexafffund
Seun Ajibola, Vibhuti Arya, Emily Barker, Kirsten T. Biggar, Dominic M. Bohemier, Julina N. Braga, Jessica L. Buchel, Vicky Bui, Julian Burtniak, Codey Dueck, Steven J. Dupas, Shayna Giesbrecht, Alexandra Haverstick, Stefan B. Hreno, Amy L. Irvine, Carter Johnson, Ivory C. Jorgenson, Matthew R. Kroeker, Corrine M. Kuo, Joo-Hee Lee, Vatineh N. Magaji, Gillian J. McIvor, Katrina S. Melgarejo, Michael D. Moore, Olamide Ogungbola, Josephine E. Payment, Daniel O. Peter-Salawu, Ashton P. Raitt, Breann Recksiedler, Megan Rodriguez, Rahel B. Sahlemariam, Shabadjot Sandhawalia, Mackenzie A. Sarvis, Megan L. Skakum, Jordan C. Small, Kassandra R. Taverner, Chaltu B. Tesfaye, Léa Tessier, Catherine J. Unrau, Natasha G. M. Wadlow, Jeffrey M. Marcus

Bibliographic record

VenueMitochondrial DNA Part B · 2019
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicGenomics and Phylogenetic Studies
Canadian institutionsUniversity of Manitoba
FundersNatural Sciences and Engineering Research Council of CanadaUniversity of Manitoba
KeywordsNymphalidaeBiologyMonophylyMitochondrial DNALepidoptera genitaliaSister groupPhylogenetic treeZoologyGeneticsBotanyCladeGene

Abstract

fetched live from OpenAlex

The brown pansy, Junonia stygia (Aurivillius, 1894) (Lepidoptera: Nymphalidae), is a widespread West African forest butterfly. Genome skimming by Illumina sequencing allowed assembly of a complete 15,233 bp circular mitogenome from J. stygia consisting of 79.5% AT nucleotides. Mitochondrial gene order and composition is identical to other butterfly mitogenomes. Junonia stygia COX1 features an atypical CGA start codon, while ATP6, COX1, COX2, ND4, and ND4L exhibit incomplete stop codons. Phylogenetic reconstruction supports a monophyletic Subfamily Nymphalinae, Tribe Junoniini, and genus Junonia. The phylogenetic tree places Junonia iphita and J. stygia as basal mitogenome lineages sister to the remaining Junonia sequences.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: none
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.006
Threshold uncertainty score0.013

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0010.001
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0020.001

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.009
GPT teacher head0.203
Teacher spread0.194 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations11
Published2019
Admission routes2
Has abstractyes

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Same venueMitochondrial DNA Part BSame topicGenomics and Phylogenetic StudiesFrench-language works237,207