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Record W2999842469 · doi:10.1017/cjn.2020.5

Pyrroline-5-Carboxylate Reductase 2 Deficiency: A New Case and Review of the Literature

2020· review· en· W2999842469 on OpenAlexaffvenue
Bushra Afroze, Saadet Mercimek‐Andrews

Bibliographic record

VenueCanadian Journal of Neurological Sciences / Journal Canadien des Sciences Neurologiques · 2020
Typereview
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicMetabolism and Genetic Disorders
Canadian institutionsHospital for Sick Children
Fundersnot available
KeywordsContent (measure theory)ReductaseChemistryComputer scienceEnzymeBiochemistryMathematics

Abstract

fetched live from OpenAlex

Pyrroline-5-carboxylate reductase 2 (EC 1.5.1.2) is involved in the endogenous proline synthesis from glutamate and pyrroline-5-carboxylate. 1,2 Its deficiency (MIM#616420) is caused by biallelic variants in PYCR2.Proline is an important amino acid for central nervous system and connective tissues. 2 Less than 30 patients have been reported in the literature. [3][4]4][5][6] The clinical features include global developmental delay, acquired microcephaly, movement disorder, seizures, and failure to thrive. [3][4]][5][6] We report a new patient with a known pathogenic homozygous PYCR2 variant who presented with early infantile onset severe global developmental delay, acquired microcephaly, failure to thrive, and delayed myelination in brain magnetic resonance imaging (MRI).Additionally, we summarized all patients published in the literature for their phenotype and genotype in this case report.This 2-year 2-month-old girl was born to healthy consanguineous Egyptian parents.The pregnancy was remarkable for maternal hypothyroidism and thyroid hormone treatment.She was delivered by an elective caesarian section at 37 weeks of gestation.Birth weight was at the 3rd percentile.Her apgars were 9 and 10 at 1 and 5 minutes, respectively.She was formula-fed due to lack of breast milk production.There was persistent vomiting and failure to thrive from the first few months of life.She was started on oral ranitidine at 4 months of age and vomiting was improved, but not failure to thrive.Developmental delay was noted from the first few months of age.She had her first generalized tonic seizure lasting 1 minute at the age of 7 months.Her electroencephalography (EEG) showed intermittent diffuse 2-3 Hz delta slowing indicating cortical encephalopathy with no epileptogenic discharges at the age of 8 months.She underwent video EEG recording, which showed four brief myoclonic jerks during drowsiness and wakefulness with generalized 2.5-3 Hz spike-and polyspike-and-wave complexes.There was intermittent sharply contoured slow-wave activity over bilateral temporal head region during sleep.She was started on levetiracetam.At the age of 18 months, she was attempting to reach objects, roll from prone to supine, and was babbling.She did not achieve unsupported sitting or acquired any words at the age of 26 months.Her weight, height, and head circumference were below the 3rd percentile.She had full eyebrows, upslanting palpebral fissures, long eyelashes, bulbous nasal tip, absent antihelix bilaterally and plagiocephaly.She had central hypotonia.Muscle stretch reflexes were +2 and symmetrical.Chromosomal microarray, ammonia, lactate, acylcarnitine profile, plasma amino acids, total and free carnitine, total homocysteine, very long chain fatty acids, transferrin isoelectric focusing, urine organic acids, urine oligosaccharides and urine Hmz c.355C>T (p.Arg119Cys) in PYCR2 3 b /9.4 3 GDD, nonambulatory, dysmorphic features, microcephaly, FTT, muscle wasting Hypomyelination, thin corpus callosum, thin brain stem Hmz c.751C>T (p.Arg251Cys) in PYCR2 4 b /7.6 3 GDD, nonambulatory, dysmorphic features, microcephaly, FTT, muscle wasting Hypomyelination, thin corpus callosum, thin brain stem Hmz c.751C>T (p.Arg251Cys) in PYCR2 5 c /6 5 GDD, seizures, nonambulatory, dysmorphic features, microcephaly, FTT, muscle wasting, spasticity Demyelination, thin corpus callosum Hmz c.28C>T (p.Glu10*) in PYCR2 6 c /2.1 5 GDD, seizures, nonambulatory, dysmorphic features, microcephaly, FTT, spasticity Delayed myelination, thin corpus callosum Hmz c.28C>T (p.Glu10*) in PYCR2 7/2.4 5 GDD, nonambulatory, dysmorphic features, microcephaly, FTT Delayed myelination, agenesis of corpus callosum Hmz c.796C>T h (p.Arg266*) in PYCR2 8 d /16.8 5 GDD, seizures, nonambulatory, dysmorphic features, microcephaly, FTT, spasticity Cerebral atrophy Hmz c.577G>A (p.Val193Met) in PYCR2 9 d /12.7 5 GDD, FTT, microcephaly, spasticity NA Hmz c.577G>A (p.Val193Met) in PYCR2 10 e /5 died 4 GDD, nonambulatory, hyperkinetic movements, dysmorphic features, microcephaly, FTT, muscle wasting, spasticity Temporal atrophy Hmz c.796G>A h (p.Arg266*) in PYCR2 11 e /NA 4 GDD, nonambulatory,

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.001
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Case report · Consensus signal: Case report
GenreCandidate signal: Review · Consensus signal: Review
Teacher disagreement score0.005
Threshold uncertainty score0.008

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.001
Meta-epidemiology (narrow)0.0020.000
Meta-epidemiology (broad)0.0020.001
Bibliometrics0.0050.004
Science and technology studies0.0010.001
Scholarly communication0.0010.002
Open science0.0010.001
Research integrity0.0020.002
Insufficient payload (model declined to judge)0.0020.001

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.027
GPT teacher head0.289
Teacher spread0.261 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designCase report
Domainnot available
GenreReview

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations9
Published2020
Admission routes2
Has abstractyes

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