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Record W3007637688 · doi:10.1186/s13104-020-4922-8

Maize genomes to fields (G2F): 2014–2017 field seasons: genotype, phenotype, climatic, soil, and inbred ear image datasets

2020· article· en· W3007637688 on OpenAlexaff
Bridget A. McFarland, Naser Alkhalifah, Martin Bohn, Jessica Bubert, Edward S. Buckler, Ignacio A. Ciampitti, Jode W. Edwards, David Ertl, Joseph L. Gage, Celeste M. Falcon, Sherry Flint-García, Michael A. Gore, Christopher Graham, Candice N. Hirsch, James B. Holland, Elizabeth E. Hood, David C. Hooker, Diego Jarquín, Shawn M. Kaeppler, J. Knoll, Greg R. Kruger, Nick Lauter, Elizabeth C. Lee, Dayane Cristina Lima, Aaron J. Lorenz, Jonathan P. Lynch, John McKay, Nathan D. Miller, Stephen P. Moose, Seth C. Murray, Rebecca Nelson, Christina Poudyal, Torbert Rocheford, Oscar Rodrı́guez, James C. Schnable, Patrick S. Schnable, Brian T. Scully, Rajandeep S. Sekhon, Kevin A.T. Silverstein, Maninder P. Singh, Margaret E. Smith, Edgar P. Spalding, Nathan M. Springer, Kurt D. Thelen, Peter R. Thomison, Mitchell R. Tuinstra, Jason G. Wallace, Ramona Walls, David M. Wills, Randall J. Wisser, Wenwei Xu, Cheng‐Ting Yeh, Natalia de León

Bibliographic record

VenueBMC Research Notes · 2020
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicGenetic Mapping and Diversity in Plants and Animals
Canadian institutionsUniversity of Guelph
FundersAgricultural Research ServiceJohns Hopkins UniversityMichigan State UniversityCollege of Engineering, Michigan State UniversityU.S. Department of AgricultureNational Institute of Food and AgricultureNational Science Foundation
KeywordsMetadataContext (archaeology)OutlierPhenomicsPopulationData scienceGenomeComputer scienceBiologyGeographyGenomicsArtificial intelligenceMedicineGeneticsWorld Wide Web

Abstract

fetched live from OpenAlex

OBJECTIVES: Advanced tools and resources are needed to efficiently and sustainably produce food for an increasing world population in the context of variable environmental conditions. The maize genomes to fields (G2F) initiative is a multi-institutional initiative effort that seeks to approach this challenge by developing a flexible and distributed infrastructure addressing emerging problems. G2F has generated large-scale phenotypic, genotypic, and environmental datasets using publicly available inbred lines and hybrids evaluated through a network of collaborators that are part of the G2F's genotype-by-environment (G × E) project. This report covers the public release of datasets for 2014-2017. DATA DESCRIPTION: Datasets include inbred genotypic information; phenotypic, climatic, and soil measurements and metadata information for each testing location across years. For a subset of inbreds in 2014 and 2015, yield component phenotypes were quantified by image analysis. Data released are accompanied by README descriptions. For genotypic and phenotypic data, both raw data and a version without outliers are reported. For climatic data, a version calibrated to the nearest airport weather station and a version without outliers are reported. The 2014 and 2015 datasets are updated versions from the previously released files [1] while 2016 and 2017 datasets are newly available to the public.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.002
metaresearch head score (Gemma)0.004
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Not applicable · Consensus signal: Not applicable
GenreCandidate signal: Dataset · Consensus signal: Dataset
Teacher disagreement score0.042
Threshold uncertainty score0.083

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0020.004
Meta-epidemiology (narrow)0.0010.001
Meta-epidemiology (broad)0.0010.001
Bibliometrics0.0030.006
Science and technology studies0.0010.000
Scholarly communication0.0010.001
Open science0.0020.002
Research integrity0.0010.001
Insufficient payload (model declined to judge)0.0140.013

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.093
GPT teacher head0.351
Teacher spread0.258 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designNot applicable
Domainnot available
GenreDataset

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations75
Published2020
Admission routes1
Has abstractyes

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