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Record W3007905878 · doi:10.1101/2020.02.27.967604

Antarctic cryptoendolithic bacterial lineages of pre-Cambrian origin as proxy for Mars colonization

2020· preprint· en· W3007905878 on OpenAlexfundno aff
Davide Albanese, Claudia Coleine, Omar Rota‐Stabelli, Silvano Onofri, Susannah G. Tringe, Jason Stajich, Laura Selbmann, Claudio Donati

Bibliographic record

VenuebioRxiv (Cold Spring Harbor Laboratory) · 2020
Typepreprint
Languageen
FieldEnvironmental Science
TopicMicrobial Community Ecology and Physiology
Canadian institutionsnot available
FundersOffice of ScienceJoint Genome InstituteCanadian Institute for Advanced ResearchU.S. Department of Energy
KeywordsEcologyEcosystemBiodiversityBiologyTaxonCladeLife on MarsMartianMars Exploration ProgramGeographyAstrobiologyPhylogenetics

Abstract

fetched live from OpenAlex

Abstract Cryptoendolithic communities are microbial ecosystems dwelling inside porous rocks. They are able to persist at the edge of the biological potential for life in the ice-free areas of continental Antarctica. These areas include the McMurdo Dry Valleys, often cited as a Terrestrial analog of the Martian environment. Despite their interest as a model for the early colonization by living organisms of terrestrial ecosystems and for adaptation to extreme conditions of stress, little is known about the evolution, diversity and genetic makeup of bacterial species that reside in these environments. We performed metagenomic sequencing of 18 communities from rocks collected in Antarctic desert areas over a distance of about 350 km. A total of 469 draft bacterial genome sequences were assembled, and clustered into 269 candidate species that lack a representative genome in public databases. The majority of these new species belong to monophyletic bacterial clades that diverged from related taxa in a range from 1.2 billion to 410 Ma, much earlier than the glaciation of Antarctica, and that are functionally distinct from known related taxa. The hypothesis that Antarctic cryptoendolithic bacterial lineages were generated by the selection of pre-existing cold-tolerant organisms whose origin dates back to the Tonian glaciations gives new insights for the possibility of life on Mars.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.001
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: Observational
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.005
Threshold uncertainty score0.010

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.001
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0020.002
Science and technology studies0.0000.000
Scholarly communication0.0010.000
Open science0.0000.001
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0020.001

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.016
GPT teacher head0.237
Teacher spread0.221 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations4
Published2020
Admission routes1
Has abstractyes

Explore more

Same venuebioRxiv (Cold Spring Harbor Laboratory)→Same topicMicrobial Community Ecology and Physiology→French-language works237,207→