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Record W3014155095 · doi:10.3389/fgene.2020.00307

Alternative Quantifications of Landscape Complementation to Model Gene Flow in Banded Longhorn Beetles [Typocerus v. velutinus (Olivier)]

2020· article· en· W3014155095 on OpenAlexafffund
Richard Borthwick, Alida de Flamingh, Maximilian H. K. Hesselbarth, Anjana Parandhaman, Helene H. Wagner, Hossam Eldien M. Abdel Moniem

Bibliographic record

VenueFrontiers in Genetics · 2020
Typearticle
Languageen
FieldEnvironmental Science
TopicWildlife-Road Interactions and Conservation
Canadian institutionsUniversity of Toronto
FundersNatural Sciences and Engineering Research Council of CanadaCooperative State Research, Education, and Extension ServiceUniversity of TorontoGeorg-August-Universität GöttingenStrategic Environmental Research and Development ProgramDeutsche ForschungsgemeinschaftU.S. Department of Agriculture
KeywordsContext (archaeology)PopulationEcologyLonghorn beetleBiologyLandscape connectivityGeographyBiological dispersal

Abstract

fetched live from OpenAlex

Rapid progression of human socio-economic activities has altered structure and function of natural landscapes. Species that rely on multiple, complementary habitat types to complete their life cycle may be especially at risk. However, such landscape complementation has received little attention in the context of landscape connectivity modelling. A previous study on flower longhorn beetles (Cerambycidae: Lepturinae) integrated landscape complementation into a continuous habitat suitability ‘surface’, which was used to quantify landscape connectivity between pairs of sampling sites using gradient-surface metrics. This connectivity model was validated with molecular genetic data collected for the banded longhorn beetle (Typocerus v. velutinus) in Indiana, USA. However, this approach has not been compared to alternative models in a landscape genetics context. Here, we used a discrete land cover map to calculate landscape metrics related to landscape complementation based on a patch mosaic model as an alternative to the previously published, continuous habitat suitability model. We evaluated the habitat suitability model surface with gradient surface metrics and with two resistance-based models based on least cost path and commute distance, in addition to an isolation-by-distance model based on Euclidean distance. We compared the ability of these competing models of connectivity to explain pairwise genetic distances (RST) previously calculated from ten microsatellite genotypes of 454 beetles collected from 17 sites across Indiana. Model selection with maximum likelihood population effects models found that gradient surface metrics were most effective at explaining pairwise genetic distances as a proxy for gene flow across the landscape, followed by landscape metrics calculated from the patch mosaic model, whereas the least cost path model performed worse than the commute distance and the isolation by distance model. We argue that the analysis of a continuous habitat suitability model with gradient surface metrics might perform better because of their combined ability to effectively represent and quantify the continuous degree of landscape complementation (i.e. availability of complementary habitats in vicinity) found at and in-between sites, on which these beetles depend. Our findings may inform future studies that seek to model habitat connectivity in complex heterogeneous landscapes as natural habitats continue to become more fragmented in the Anthropocene.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Simulation or modeling · Consensus signal: Simulation or modeling
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.168
Threshold uncertainty score0.448

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.032
GPT teacher head0.261
Teacher spread0.229 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designSimulation or modeling
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations6
Published2020
Admission routes2
Has abstractyes

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