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Record W3014938518 · doi:10.1126/sciadv.aay9572

Ribosome-associated vesicles: A dynamic subcompartment of the endoplasmic reticulum in secretory cells

2020· article· en· W3014938518 on OpenAlexaff
Stephen D. Carter, Cheri M. Hampton, Robert Langlois, Roberto Melero, Zachary J. Farino, Michael Calderon, Wen Li, Callen T. Wallace, Ngoc-Han Tran, Robert A. Grassucci, Stephanie Siegmund, Joshua G. Pemberton, Travis J. Morgenstern, Leanna Eisenman, Jenny I. Aguilar, Nili L. Greenberg, Elana S. Levy, Edward Yi, William Mitchell, William J. Rice, Christoph Wigge, Jyotsna Pilli, Emily W. George, Despoina Aslanoglou, Maïté Courel, Robin Freyberg, Jonathan A. Javitch, Zachary P. Wills, Estela Área-Gómez, Sruti Shiva, Francesca Bartolini, Allen Volchuk, Sandra Murray, Meir Aridor, Kenneth N. Fish, Peter Walter, Tamás Balla, Deborah Fass, Sharon G. Wolf, Simon C. Watkins, J.M. Carazo, Grant J. Jensen, Joachim Frank, Zachary Freyberg

Bibliographic record

VenueScience Advances · 2020
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicLipid Membrane Structure and Behavior
Canadian institutionsHospital for Sick Children
FundersFP7 Ideas: European Research CouncilNational Center for Research ResourcesNational Institute of Neurological Disorders and StrokeNational Institute of General Medical SciencesNational Institute on Drug AbuseNational Institute on AgingAgencia Estatal de InvestigaciónNational Institutes of HealthU.S. Department of DefenseCalifornia Institute of TechnologyEuropean CommissionInnovative Research Group Project of the National Natural Science Foundation of ChinaComunidad de MadridIsrael Science FoundationLeon Levy FoundationNational Cancer InstituteWeizmann Institute of ScienceNational Institute of Allergy and Infectious DiseasesHoward Hughes Medical InstitutePittsburgh FoundationMinisterio de Economía y CompetitividadNational Science Foundation
KeywordsEndoplasmic reticulumCell biologyVesicleReticular connective tissueRibosomeCellSecretionBiophysicsChemistryBiologyMembraneBiochemistryAnatomyRNA

Abstract

fetched live from OpenAlex

The endoplasmic reticulum (ER) is a highly dynamic network of membranes. Here, we combine live-cell microscopy with in situ cryo-electron tomography to directly visualize ER dynamics in several secretory cell types including pancreatic β-cells and neurons under near-native conditions. Using these imaging approaches, we identify a novel, mobile form of ER, ribosome-associated vesicles (RAVs), found primarily in the cell periphery, which is conserved across different cell types and species. We show that RAVs exist as distinct, highly dynamic structures separate from the intact ER reticular architecture that interact with mitochondria via direct intermembrane contacts. These findings describe a new ER subcompartment within cells.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.008
Threshold uncertainty score0.251

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.007
GPT teacher head0.242
Teacher spread0.236 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations71
Published2020
Admission routes1
Has abstractyes

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