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Record W3016385404 · doi:10.1038/d41586-020-01128-8

Deep learning takes on tumours

2020· article· en· W3016385404 on OpenAlexaff
Esther Landhuis

Bibliographic record

VenueNature · 2020
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicCell Image Analysis Techniques
Canadian institutionsWorld Federation of Science Journalists
Fundersnot available
KeywordsComputer scienceArtificial intelligence

Abstract

fetched live from OpenAlex

1. von Chamier, L. et al. Preprint at bioRxiv https://doi.org/10.1101/2020.03.20.000133 (2020). 2. Perlman, Z. E. et al. Science 306 , 1194–1198 (2004). PubMed Article Google Scholar 3. Ljosa, V. et al. J. Biomol. Screen. 18 , 1321–1329 (2013). PubMed Article Google Scholar 4. Ando, D. M., McLean, C. Y. & Berndl, M. Preprint at bioRxiv https://doi.org/10.1101/161422 (2017). 5. Warchal, S. J., Dawson, J. C. & Carragher, N. O. SLAS Discov. 24 , 224–233 (2019). PubMed Google Scholar 6. Warchal, S. J. et al. Bioorg. Med. Chem. 28 , 115209 (2020). PubMed Article Google Scholar 7. Ma, J. et al. Nature Meth. 15 , 290–298 (2018). Article Google Scholar 8. Ouyang, W. et al. Nature Meth. 16 , 1254–1261 (2019). Article Google Scholar 9. Poirion, O. B., Chaudhary, K., Huang, S. & Garmire, L. X. Preprint at medRxiv https://doi.org/10.1101/19010082 (2019). 10. Torroja, C. & Sanchez-Cabo, F. Front. Genet. 10 , 978 (2019). PubMed Article Google Scholar Download references

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.001
metaresearch head score (Gemma)0.005
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Not applicable · Consensus signal: none
GenreCandidate signal: Empirical · Consensus signal: none
Teacher disagreement score0.007
Threshold uncertainty score0.024

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0010.005
Meta-epidemiology (narrow)0.0010.000
Meta-epidemiology (broad)0.0010.001
Bibliometrics0.0010.001
Science and technology studies0.0010.002
Scholarly communication0.0020.004
Open science0.0010.002
Research integrity0.0020.004
Insufficient payload (model declined to judge)0.0070.002

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.005
GPT teacher head0.251
Teacher spread0.246 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designNot applicable
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations51
Published2020
Admission routes1
Has abstractyes

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